Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0349 ATGGAAGTTGAGGCGGCGAAAGCGCTGAAACCGAGCTTGCGGACAGAGTTTATTTTCCCGCAAGCAATTTGCGACGAGATTTTGTGCCTGAACGCAAACAACATTGTTGTGAGTGAAGATTTCTCCGTGGACGACCTGCTTGACTTCTCCAACGGCGAAGTCCAAGTTGGGAAAGAAATTGACGACTACGAAGAAGAGGAAGACGAAGAAAAAGACAGCACCACCTCTCAGTCACAGGACCCAACAGAAGACGACAGCAACTCCAATTCTACCGCCGGCGCCGCCGACTCTGACTCCGTTTTCGCCGGCGAGTTGTCTGTTCCGGCTGATGACGTGGCGGACCTGGAGTGGGTTTCTCACTTTGTGGACGATTCTCTCCCGGAGCTCTCTCTATTGTACCCGGTTCGTTCCGAGCAAACAAGAGAACAGGCCGAACCGGAACCTAGACCGGGCTCAGCGCAGGCCTCGTTTAATCACTCAGCAGTCCCCAGCAAGCCCAGAACCAGAAAGACTAGAAAGCCCATATCTCGTGTCTGGTCCTTTAACGCCTCGCTCTCGCCGCCGTCTTTGTGTTCTTCAGTGTTGGATGGCTCCGTCCCGAGGAAGGAGTTTGGCGAGCCGCCGGCTAAGAAGCAGAAGAAAAAGGCCGAGGCCCAGAGCAGTGGGGCCCAGTTGCAGCGACGGTGCAACCACTGTCAGGTGCAGAAAACGCCACAGTGGAGAACCGGCCCACTGGGCCCAAAAACACTCTGCAACGCTTGCGGGGTTCGGTACAAGTCCGGCCGACTTTTTCCTGAGTATAGACCGGCATGTAGCCCCACTTTCTCTGGCGATATTCACTCGAATAGTCATCGTAAAGTGTTGGAGATGAGGCGGAGAAAGGAGATGAATGGACCGGAGACCGATTCGGACCGGGTTCAAATGGTTCCGAGTTGCTGA 939 0.5474 MEVEAAKALKPSLRTEFIFPQAICDEILCLNANNIVVSEDFSVDDLLDFSNGEVQVGKEIDDYEEEEDEEKDSTTSQSQDPTEDDSNSNSTAGAADSDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVRSEQTREQAEPEPRPGSAQASFNHSAVPSKPRTRKTRKPISRVWSFNASLSPPSLCSSVLDGSVPRKEFGEPPAKKQKKKAEAQSSGAQLQRRCNHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEMNGPETDSDRVQMVPSC* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0349 312 MobiDBLite consensus disorder prediction 55 100 - -
Apr5g0349 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 286 - -
Apr5g0349 312 ProSiteProfiles GATA-type zinc finger domain profile. 223 259 IPR000679 GO:0006355|GO:0043565
Apr5g0349 312 SMART GATA_3 223 277 IPR000679 GO:0006355|GO:0043565
Apr5g0349 312 MobiDBLite consensus disorder prediction 196 223 - -
Apr5g0349 312 MobiDBLite consensus disorder prediction 203 217 - -
Apr5g0349 312 CDD ZnF_GATA 228 285 IPR000679 GO:0006355|GO:0043565
Apr5g0349 312 MobiDBLite consensus disorder prediction 59 73 - -
Apr5g0349 312 Pfam GATA zinc finger 229 262 IPR000679 GO:0006355|GO:0043565
Apr5g0349 312 PANTHER GATA TRANSCRIPTION FACTOR 1 312 - -
Apr5g0349 312 PIRSF Txn_fac_GATA_plant 5 311 IPR016679 GO:0003677|GO:0005634|GO:0045893
Apr5g0349 312 MobiDBLite consensus disorder prediction 137 175 - -
Apr5g0349 312 ProSitePatterns GATA-type zinc finger domain. 229 254 IPR000679 GO:0006355|GO:0043565
Apr5g0349 312 Gene3D - 220 297 IPR013088 GO:0006355|GO:0008270
Apr5g0349 312 PANTHER GATA TRANSCRIPTION FACTOR 1 312 - -
Apr5g0349 312 MobiDBLite consensus disorder prediction 79 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0349 Apr-Chr5 3268282 3269794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0349 40 294 C2C2-Gata Transcription Factor Family AT4G36240 42.424 8.20e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr5g0349 GATA 2.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0349 - - gmx:100776188 434.876