LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0336	ATGTCCAGAACGCAACAAGAAGAAATAGTAAAAGGATCAAAGTGTCATGATTGTGGGAACCAAGCTAAGAAGGATTGTGCATACTCAAGGTGCAGAACTTGCTGCAAGAACAAAGGGTTCGAGTGCCAAACTCACATCAGAAGCACTTGGATTCCTGTAGATAGAAGGCGCCACAGAGTGGAGCAGCCACCAGATATTCCTAAGAGGCACAAGCAGAGCTCATATTCAAGTTTAGAGGAGTTCAAATTTCCTGCAGTGATGAGTTCCATGGCGTTATTCAGCTGCGTTAGGGTGCGCTCTATGGATGATACGGTCAATGAAATCGCCTACCAGACATCTGTGAACATTGGAGGACATGTATTCAGTGGTCTTCTTTATGATCAAGGCCCTGAACAAAGCTTCAATGCTAGGGGTGACATGGATCCTCTTGATCAGCAACACAATCTCAATCTTAGCAGTGATGGTGCAAGTGCAACTATGGCTCCACTATCAGCCCCTGCAACTCATGAGCTTTTTCTTCCTCCATCGCATCCGTTCCCCCTTGCTTCCTTCAGGCCCGGTATGACATACTTGTCACACCCAAAACCTTAA	591	0.4619	MSRTQQEEIVKGSKCHDCGNQAKKDCAYSRCRTCCKNKGFECQTHIRSTWIPVDRRRHRVEQPPDIPKRHKQSSYSSLEEFKFPAVMSSMALFSCVRVRSMDDTVNEIAYQTSVNIGGHVFSGLLYDQGPEQSFNARGDMDPLDQQHNLNLSSDGASATMAPLSAPATHELFLPPSHPFPLASFRPGMTYLSHPKP*	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g0336	196	TIGRFAM	put_zinc_LRP1: putative zinc finger domain, LRP1 type	14	56	IPR006510	-
	Apr5g0336	196	Pfam	Domain of unknown function (DUF702)	75	131	-	-
	Apr5g0336	196	Pfam	Domain of unknown function (DUF702)	12	73	-	-
	Apr5g0336	196	PANTHER	PROTEIN LATERAL ROOT PRIMORDIUM 1	3	185	IPR007818	GO:0003700\|GO:0006355
	Apr5g0336	196	PANTHER	BNAC01G23660D PROTEIN	3	185	-	-
	Apr5g0336	196	TIGRFAM	LRP1_Cterm: LRP1 C-terminal domain	82	130	IPR006511	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0336	Apr-Chr5	3085983	3086859	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g0336	15	127	C2H2 Transcription Factor Family	AT3G51060	49.640	3.78e-43	146

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SRS	Apr5g0336		DUF702	3.5e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0336	-		-	gmx:102662493	305.834