Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g0328 | ATGCCCATGTTATCTAAGGAGAGTAATATTATTCTTACTCAGAATCAATCTATCCAAGATGGTGAGACCCTGGTCTCAGCAGGGGGAACCTTTGAGGCAGGATTCTTCAACTTTAAAAATTCAAAATACCAATACTTTGGTATATGGTACAAGAACATATCACCTAGGACAATTTTGTGGGTAGCCAACAGAGACACCCCAGTTGAAAACTCTACAGCAATTTTGAATCTTACATCACAAGGAAATTTTTTTATTTTTGATGGCTCAAAGGGTATAATATGGTCCTCCATCACATCAAGAACTGGAGAGAAACCCTTCATGCAGCTTTTAGACTCAGGAAACCTTGTTGTGAAAGATGGAGACAAGGGAGAGAACCTTTTGTGGGAAAGCTTTGATTATCCTGGGGACACTTTCCTTGCAGGAATGAAGATTAAGAGCAACTTAGAAACTGGTCCATATAGGTCTCTAACATCTTGGAGGAGCACAGAAGACCCTGCTGGTGGGGAGTTTTCATTTCACATAGATATTTGTGGCTTTCCTCAATTAGTTGTTACTAAAGGAGCAAATGTAATTATCAGAGCAGGCCCATGGATTGGCCAATATTTTTCAGGAGCTTCTTTGCTAAGAGTTCAGAAATTCTTGAAATACTCTTTGCTGTTTACTGACAATGAAATCTCTTATGGATATGAAACCATGAACAGTTCAGTTATTACTAGAGCAGTGCTCAACCCATCAGGCATTACACAACGTTTGATTTGGTCAGACGAGACTAGAAGTTGGGAGATTGTATCTACTCACCCCGGCGATCAGTGTGAATACTATGCCTTTTGTGGTGCTAACTCAAATTGTGATGTTGCTAACAATCCAATATGTGAATGCTTGGAAGGGTTCAGTCCTAAATTTCAAGCAAAATGGAGTTCATTAGATTGGGCTGACGGATGTGTTCCGATGAAAGATTTAAGTTGTGTGAATGAAGATGGTTTTCTCAAATACTCAGGAATGAAGTTGCCAGACACGTCTTCTTCATGGTTTGGCAAGATAATTTTTGAAAATCACAAAAGGGATAAGAGGAACTTTAATACCAAGAAGCTAGCAGGAACTCTTGCTGGAGTTATTACATTCATCATATGCATAACAATCCTTGGATTGGTGACATCCACATGTATACAGAGGAAGAAGAATAAGAAGCCAAGGGACTTTGCGACAAGAATTATACATGACTGGAAGGACAAGAGAAGGGACGAGGACATTGATTTGGCAACAATATTTAATTTTTCAACCATTTCTAAAGCCACAGATAATTTTTCAGAAAATAACAAATTAGGACAAGGTGGCTTTGGACCAGTATACAAGGGCTTGTTGGCAGATGGTCAAGAAATTGCTGTCAAGAGACTTTCTAATACTTCTGGGCAAGGAACAAAGGAGTTCAAAAATGAAGTCATGTTGATGGCAAGACTTCAGCATCGCAATCTTGTAAAACTTTTGGGTTGTTCTATTCATCAAGATGAAAAGTTGCTAATCTATGAATTCATGCACAATGGAAGCTTGGACTACTTCATTTTTGATTCAACACGAAGTAAACTAGTAGATTGGAACAAGCGCTTCCAAATCATTGATGGGATTGCTCGAGGGCTTTTATATCTTCACCAAGACTCAAGACTGAGAATAATCCACAGAGATCTCAAAACTAGTAACATTCTTCTTGATAACGAAATGAACCCAAAAATATCAGATTTTGGTTTGGCTAGAACTATTATAGGAGATCAAGTTGAGGACAAAACAAAGAGAGTGATGGGAACATATGGTTATATGCCTCCCGAGTATGCAGTGCATGGATCTTTTTCAATCAAATCTGATGTCTTTAGTTTCGGTGTAATTGTACTTGAGATAATTAGCGGGAGAAAGATTCAAGGATTTTGTGACCCTCACCACCATCTCAATCTTCCAAGTCATGCATGGAGGCTGTGGGTTGAAGAAAGACCATTAGAGCTGATTGAGGAATTATTAGATGATTTAGTCACTCCTTGTGAAATACTGCGATATATTCACGTGGGCCTATTATGTGTACAACAAAGACCAGAAAATAGGCCCAACATGTTAAATGTAGTTTTAATGTTGAACGGTGAAAAAGCACTTCCCAAGCCAAGCCAGCCCGCGTTTTACACGGGAAACGATATTCCAATTTGGCCGAAGTCTAGTTCAAAAAACTCGGTAAGTTATTCAACAAATGATATTTCCATCTCAATAATAGAGGCTAGATAG | 2262 | 0.3868 | MPMLSKESNIILTQNQSIQDGETLVSAGGTFEAGFFNFKNSKYQYFGIWYKNISPRTILWVANRDTPVENSTAILNLTSQGNFFIFDGSKGIIWSSITSRTGEKPFMQLLDSGNLVVKDGDKGENLLWESFDYPGDTFLAGMKIKSNLETGPYRSLTSWRSTEDPAGGEFSFHIDICGFPQLVVTKGANVIIRAGPWIGQYFSGASLLRVQKFLKYSLLFTDNEISYGYETMNSSVITRAVLNPSGITQRLIWSDETRSWEIVSTHPGDQCEYYAFCGANSNCDVANNPICECLEGFSPKFQAKWSSLDWADGCVPMKDLSCVNEDGFLKYSGMKLPDTSSSWFGKIIFENHKRDKRNFNTKKLAGTLAGVITFIICITILGLVTSTCIQRKKNKKPRDFATRIIHDWKDKRRDEDIDLATIFNFSTISKATDNFSENNKLGQGGFGPVYKGLLADGQEIAVKRLSNTSGQGTKEFKNEVMLMARLQHRNLVKLLGCSIHQDEKLLIYEFMHNGSLDYFIFDSTRSKLVDWNKRFQIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDNEMNPKISDFGLARTIIGDQVEDKTKRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVIVLEIISGRKIQGFCDPHHHLNLPSHAWRLWVEERPLELIEELLDDLVTPCEILRYIHVGLLCVQQRPENRPNMLNVVLMLNGEKALPKPSQPAFYTGNDIPIWPKSSSKNSVSYSTNDISISIIEAR* | 754 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g0328 | 753 | SMART | serkin_6 | 435 | 682 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Apr5g0328 | 753 | ProSiteProfiles | Bulb-type lectin domain profile. | 9 | 130 | IPR001480 | - | |
| Apr5g0328 | 753 | SMART | blect_4 | 15 | 134 | IPR001480 | - | |
| Apr5g0328 | 753 | Gene3D | Transferase(Phosphotransferase) domain 1 | 511 | 716 | - | - | |
| Apr5g0328 | 753 | CDD | B_lectin | 15 | 134 | IPR001480 | - | |
| Apr5g0328 | 753 | Pfam | S-locus glycoprotein domain | 193 | 301 | IPR000858 | GO:0048544 | |
| Apr5g0328 | 753 | SUPERFAMILY | Protein kinase-like (PK-like) | 419 | 706 | IPR011009 | - | |
| Apr5g0328 | 753 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 58 | 165 | IPR036426 | - | |
| Apr5g0328 | 753 | Gene3D | Phosphorylase Kinase; domain 1 | 402 | 510 | - | - | |
| Apr5g0328 | 753 | CDD | STKc_IRAK | 441 | 708 | - | - | |
| Apr5g0328 | 753 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 354 | 740 | - | - | |
| Apr5g0328 | 753 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 9 | 344 | - | - | |
| Apr5g0328 | 753 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 556 | 568 | IPR008271 | GO:0004672|GO:0006468 | |
| Apr5g0328 | 753 | ProSiteProfiles | Protein kinase domain profile. | 435 | 720 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Apr5g0328 | 753 | Pfam | Protein tyrosine and serine/threonine kinase | 438 | 702 | IPR001245 | GO:0004672|GO:0006468 | |
| Apr5g0328 | 753 | PANTHER | S-LOCUS LECTIN KINASE FAMILY PROTEIN | 354 | 740 | - | - | |
| Apr5g0328 | 753 | PANTHER | S-LOCUS LECTIN KINASE FAMILY PROTEIN | 9 | 344 | - | - | |
| Apr5g0328 | 753 | Pfam | D-mannose binding lectin | 57 | 160 | IPR001480 | - | |
| Apr5g0328 | 753 | PIRSF | SRK | 346 | 753 | IPR024171 | GO:0004674 | |
| Apr5g0328 | 753 | PIRSF | SRK | 2 | 352 | IPR024171 | GO:0004674 | |
| Apr5g0328 | 753 | Gene3D | - | 5 | 131 | IPR036426 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr5g0328 | Apr-Chr5 | 3011815 | 3015101 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr5g0328 | 423 | 753 | Receptor kinase-like Gene Family | AT4G11480 | 52.941 | 1.33e-118 | 369 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_DLSV | Apr5g0328 | PK_Tyr_Ser-Thr | 3.4e-47 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr5g0328 | - | - | lja:Lj3g3v3375760.2 | 1054.28 |