Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0325 ATGAAGGAAAAGAGAAGTTTTTCTGAATTTGTGTCAGAGTTAATAGTTCTAGCTGATGAGGTTGCTTCTTTTACTAAGAATCCTGAAATCAAGGTAGATGATGCTTTTGCTGAGTTTGGCATGTTGGTTGAGAAATTCGCACCAATCTTCAATGACTTGAGAGACAAAAGCACAATCATGAACAAGCCAGCCATTAGGAAGTCTTTGGAATCACTTATGAATGAGCTTGGTCGTGCTAAAGCTTTGATCAAAAGCCACTCTTTGAAAGAGCCCATCAAACGAATTGAGAACATAACACATGATCTTGGTCGATCATTAGGCATGCTGCTTGTGGCCACCCGTGAAATGTCCGCAGATTTTAGAGAAAAGATTGGTACATTGCAGAAACAGCTGATGACTGCTAGGTTTGTTGGGAATACGAGTCTAACTTCATGTTCAATATCAAAGTTTGTCAATGAAATGAAGGTGGTAGGGGAAATAGAAGAGGAAATAATTAATGTTACTAGTGACGATGTTTTGCTACAGCTTAAGAATGGTAACACTGAAGAAGTTGCAGTTGCACTTTTAAGACTAAAGAAGTTCTTCAAGGTTGGAAAACTAGACAGTGGTTTGGTTAACGTGGAAGCTGTTGTTTTCATTCTTTTCAATTGTCTAGGTTCATGTAAAGCAGGCAATAGGCTTACCATCATTCAATTGCTACGAAATATTGCTTTGGGAAATGATGAGACAAAGGAGAAGATGACAAATATTGAGTTTTTATCAGCAGTGGTGAAGTCTCTAACTAGAGACACTGAAGAGAGGAGAGAAGCAGTGGGACTGCTGCTTGAACTCTCTGACCTTCCTGCAGTTAGAAGGAAGATTGGAAGAATTCAGGGGTGTATCGTTATGTTAGTTTCTATCTTGAATGGAATTGACCCTGTTGCTTCACATGATGCTGCAAAGTTGTTGGATATATTATCCTATAATACACAAAATGCACTTCATATGGCTGAGGCCGGTTACTTTGGGCCACTAGTGCTGTATCTGAATGAAGGTTCTGACATGAAAAAGATACTTATGGCAACAACACTTTCTAGGCTGGTGCTCACTGATCATAGCGAACTTATCCTTGGACAAGATGGGGCAATTGAGCTCCTTGCGAAAATGTTCAATTCTGGGAAACTCGAGTCCAAGTCATCTGCTCTAAATGCACTCCAAAATCTTACCAGCTTGACAGAAAATGTGCAACGTTTGATCAGAACTGGAATTGCAGGAAATCTTCTACAACTTCTTTTCTCTACAACATCTGTGCTCATAACTCTAAGGGAGCCTGCAGCAGCTATTCTTGCAAGAATTGCTAAGTCAGGATCTGTTCTTGTTAATCAAAGTGTGGCTCAACAGATGCTCTCACTCTTGAATCTTTCTAGCCCAGTAATTCAAGGTCATATATTAGAATCTCTAAATAGCATTGCTTCCCATGCTTGTGCTTCAAAAGTCAGAAGCAAAATGAAGGAAAGAGGAGCACTTCAGCTAGTTTTACCTCTTCTGAAGGAAACAAAAATTGAAATACGGAGCAAGGCCGTCAAATTGTTGTATACTCTCTCCGAAGATCTAACAGATGAGTTGAGTGAACATCTTGATGAAACTCATCTTTTTGACATTGTTAACATTGTCTCATCATCAACATCAGATTGTGATAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTAGTGATAAAAAAGTAACAGATGTACTGAAAAGAGCTAATTTGTTGTCTATTTTGGTATCCATCATGGATTCAGGTTCCAGAACTAACTCATGCACTAGAAGGAGCTTAATGGAGAGTATTTCAGGCATTGCAATCCGGTTCACATGTTCTTCTGACCAGAAACTACAACTTTTTTCAGCACAACATGGGGTGATTCCTTTGCTTGTTAAACTGCTCTCAAGTAGTTCAGCAATCACAAAACTTAGAGCTGCAATCTCTCTCACTCAACTATCACAGAATTCCCTCTCTCTTAGGAGGTCTAGGAAGTCAAGGTGGTTGTGTGTTCCTCCCTCAGTGGATGCATATTGTGAAGTTCATGATGGTTATTGCTTTGTAAGCAGCACATTTTGTTTGATCAAGGCAGGTGCAGTTTCTCCACTTATCCAAATACTAGAAGATAAGGATGAAGAAGTAGTAGAAGCTGCTTTGAATGCCCTTTCAACTCTTTTGCAAGATGAGATATGGGAAGGTGGTGTCAATTGCATAACCAAATTGTCAGGTGTAAATGCTCTTGTCAAAATATTAGAAGCAGGTGATGTGAAGGTTCAAGAAAAAGCATTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACACAGAATAAAATATGGAGATTTTGCTCAAGTTGTTCTTATTGATCTTGCACAGAGGAGTGATTCTAGATTAAAGTCAACAGTTGCAAAGGTTTTGGCTGTGCTGGAGCTCCTGCTAGTTCAATCAAGCTATTTTTGA 2487 0.3936 MKEKRSFSEFVSELIVLADEVASFTKNPEIKVDDAFAEFGMLVEKFAPIFNDLRDKSTIMNKPAIRKSLESLMNELGRAKALIKSHSLKEPIKRIENITHDLGRSLGMLLVATREMSADFREKIGTLQKQLMTARFVGNTSLTSCSISKFVNEMKVVGEIEEEIINVTSDDVLLQLKNGNTEEVAVALLRLKKFFKVGKLDSGLVNVEAVVFILFNCLGSCKAGNRLTIIQLLRNIALGNDETKEKMTNIEFLSAVVKSLTRDTEERREAVGLLLELSDLPAVRRKIGRIQGCIVMLVSILNGIDPVASHDAAKLLDILSYNTQNALHMAEAGYFGPLVLYLNEGSDMKKILMATTLSRLVLTDHSELILGQDGAIELLAKMFNSGKLESKSSALNALQNLTSLTENVQRLIRTGIAGNLLQLLFSTTSVLITLREPAAAILARIAKSGSVLVNQSVAQQMLSLLNLSSPVIQGHILESLNSIASHACASKVRSKMKERGALQLVLPLLKETKIEIRSKAVKLLYTLSEDLTDELSEHLDETHLFDIVNIVSSSTSDCDKAAAVGILSNLPVSDKKVTDVLKRANLLSILVSIMDSGSRTNSCTRRSLMESISGIAIRFTCSSDQKLQLFSAQHGVIPLLVKLLSSSSAITKLRAAISLTQLSQNSLSLRRSRKSRWLCVPPSVDAYCEVHDGYCFVSSTFCLIKAGAVSPLIQILEDKDEEVVEAALNALSTLLQDEIWEGGVNCITKLSGVNALVKILEAGDVKVQEKALWMLERIFRVEEHRIKYGDFAQVVLIDLAQRSDSRLKSTVAKVLAVLELLLVQSSYF* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0325 828 Pfam Armadillo/beta-catenin-like repeat 702 734 IPR000225 GO:0005515
Apr5g0325 828 Gene3D - 488 676 IPR011989 -
Apr5g0325 828 Gene3D - 162 487 IPR011989 -
Apr5g0325 828 Gene3D - 693 822 IPR011989 -
Apr5g0325 828 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 707 734 IPR000225 GO:0005515
Apr5g0325 828 SUPERFAMILY ARM repeat 342 783 IPR016024 -
Apr5g0325 828 SMART arm_5 740 780 IPR000225 GO:0005515
Apr5g0325 828 SMART arm_5 622 664 IPR000225 GO:0005515
Apr5g0325 828 SMART arm_5 489 529 IPR000225 GO:0005515
Apr5g0325 828 SMART arm_5 696 736 IPR000225 GO:0005515
Apr5g0325 828 SMART arm_5 240 279 IPR000225 GO:0005515
Apr5g0325 828 SMART arm_5 363 403 IPR000225 GO:0005515
Apr5g0325 828 SUPERFAMILY ARM repeat 173 361 IPR016024 -
Apr5g0325 828 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 2 828 - -
Apr5g0325 828 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0325 Apr-Chr5 2958440 2962265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0325 221 815 U-box Gene Family AT1G76390 29.641 9.53e-47 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0325 K08332 - gmx:102659538 1261.51