Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0306 ATGTTGCATTGTCTGAACACTTCGGGGAATCTAGTAGGAGCGAGCTGTTCGGAAATGACGGTGTTGGAACGGCAAAGGGAAAGGGTGAGGTGGCAACAGCAGGATCACCATCACCAACCCTTCTTCTGTTCAACGGAGCTTAACGCCGTTTTCTCTTCTTCTTCTTCTTCTACTTCTGCTACTACTTCTCTGCAAGCTCTGAATATTCCTCACTTAGGTGACTCCGCGCTTGGAGAGGTGCTAGCTCATACCGTCAAACCCGAATTGGGAACCGGGTTCGGATCTTCTTCTGGTTTCGTTGCCGCTTCTGCTATTTCGAGGACTTGTAGCAGAGACAGAGACTTGGTTTCAGCCACGGAAAAGATGGTGGTTGGGAAAGAAACCTCTAAGAAGAGGAAAGCTGAGAAGGTGGTTGCGGATAGCGATAAGAGACTGAAAGTGAGTGGTGAAGAAGGGGAATCAAAAACAACGGAGCAAACGAGCAACAAAAATGCCAAGTCCAACAACACTAACAGAAACAACAGGGAAACATCCGCGGATACTTCAAAAGGTTCAGAGGTTCAAAATCAAAAGCCTGAATACATTCATGTGAGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAGAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCCGGGTGCAACAAAATTGCAGGAAAAGCTGGCATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTAAACCCAAGGCTTGACTTCAACATTGATGAACTGTTGGCCAAAGAGGTGTTTCCTTCTTGTGCACAAAGTTATCCAAACATGGGGATGGCATCAGATATGACTATGACTAACCCCAACAACGCCTATCTTCAGTTCAATTCAGCACAACAGCTTGTCTCGTGCTGTGGTGGGTTAATAAATAATATGGGTGTAAGCCCTCCTCCCAATATGGGGCTTCGGAGGAACATTGGTGCTCCTGTGTCTTTGCCTGAAACCTTTCTTGACACATCCTGTTTCACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGATTTCCAAAACCTTTACAATGTGGCTTTTGATCAAGGGCGAACAACATCCTTTTCTTCTCAGCCATTTACAGGTCTAATTGAAGCTAGCAATCTAAAGATGGAGATGTAA 1221 0.4464 MLHCLNTSGNLVGASCSEMTVLERQRERVRWQQQDHHHQPFFCSTELNAVFSSSSSSTSATTSLQALNIPHLGDSALGEVLAHTVKPELGTGFGSSSGFVAASAISRTCSRDRDLVSATEKMVVGKETSKKRKAEKVVADSDKRLKVSGEEGESKTTEQTSNKNAKSNNTNRNNRETSADTSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELLAKEVFPSCAQSYPNMGMASDMTMTNPNNAYLQFNSAQQLVSCCGGLINNMGVSPPPNMGLRRNIGAPVSLPETFLDTSCFTQILPSSNWEGDFQNLYNVAFDQGRTTSFSSQPFTGLIEASNLKMEM* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0306 406 CDD bHLH_AtBPE_like 193 278 - -
Apr5g0306 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 253 IPR011598 GO:0046983
Apr5g0306 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 272 IPR036638 GO:0046983
Apr5g0306 406 MobiDBLite consensus disorder prediction 123 157 - -
Apr5g0306 406 MobiDBLite consensus disorder prediction 123 211 - -
Apr5g0306 406 MobiDBLite consensus disorder prediction 158 189 - -
Apr5g0306 406 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 17 387 IPR024097 GO:0006355
Apr5g0306 406 Pfam Helix-loop-helix DNA-binding domain 207 254 IPR011598 GO:0046983
Apr5g0306 406 SMART finulus 209 259 IPR011598 GO:0046983
Apr5g0306 406 MobiDBLite consensus disorder prediction 193 211 - -
Apr5g0306 406 Gene3D - 200 274 IPR036638 GO:0046983
Apr5g0306 406 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 17 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0306 Apr-Chr5 2788259 2791340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0306 18 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.974 2.40e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g0306 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0306 - - gmx:100794256 527.709