Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0303 ATGGCTTCTGCAGAAGTTGAGTACCGTTGCTTTGTGGGTGGGCTTGCTTGGGCCACCGACAACGATGCTCTGGAGAAAGCCTTCTCTCCTTACGGCCACGTCGTTGAATCGAAGGTTATCAACGATCGTGAGACTGGGAGGTCCAGAGGTTTCGGATTTGTGACCTTCACCTCGGAGCAGTCTATGAAAGATGCGATCGAAGGGATGAACGGCCAGAATCTTGATGGTCGAAACATTACTGTGAATGAAGCTCAGTCCCGCGGTAGGAGCGGCGGCGGAGGCGGAGGCGGAGGTTATGGAGATGGTGGTGGATACAGCCGTGGTGGTGGTGGTGGATACGGTGGTCGTCGTGAAGGTGGATATAGCCGTAACGGAGGATATGGAGGAGGTGGTTTTGGCGGTGGCCGAGACCGTGGTTATGGTGACGGGGGTTCGCGCTACTCTCGCGGTGGAGATGGAGGTGCTTCTGACGGAAGCTGGAGGAATTAG 489 0.5603 MASAEVEYRCFVGGLAWATDNDALEKAFSPYGHVVESKVINDRETGRSRGFGFVTFTSEQSMKDAIEGMNGQNLDGRNITVNEAQSRGRSGGGGGGGGYGDGGGYSRGGGGGYGGRREGGYSRNGGYGGGGFGGGRDRGYGDGGSRYSRGGDGGASDGSWRN* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0303 162 MobiDBLite consensus disorder prediction 82 162 - -
Apr5g0303 162 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 162 - -
Apr5g0303 162 PANTHER GEO13361P1-RELATED 1 162 - -
Apr5g0303 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Apr5g0303 162 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Apr5g0303 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Apr5g0303 162 SMART rrm1_1 9 82 IPR000504 GO:0003723
Apr5g0303 162 Gene3D - 2 106 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0303 Apr-Chr5 2713530 2715452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0303 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 1.22e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0303 - K13195 lja:Lj1g3v2296520.2 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0303 5 2713530 2715452 Apr5g0303 5 2713530 2715452 ECH