Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0297 ATGACAGACTCCACCACCGCCACAACCTCATCTCTCAGCTTCAAGCTCCTCCTCTTAGTAGCCATTTTACTTGTCACCGTAGTGGTCATCCTTCTTCTCATCTTCTTCCTCTGCTTCCGCGGTACCCGAAGCTGCAAGAAGCGCAAGTTAGTGGCCAAACACAGCTCCGGCACCATCCCTCTGGTGTCCAAGGAGATCATGGTGGTTAAGGCCTCCGATCTCACCCCTTCCTCTGAACCATCGCAGAGTGAGATTGATGATGTGGACGTTGATCCGAAGAAGGAGGCGGACATCATGGTTGAAATCGAAGGGACTAGGAAGAGCGACGTGTCTGGTGGGGGCCACCGCAGCGAGGTGTCGGTGGAAGATCCCAACATAGGGTGGGGTCGTTGGTATACCCTTAGGGAAGTGGAACTCGCAACGCGTGGATTTGCAGAAGGGAATGTCATTGGAGAAGGTGGGTATGGGGTTGTATACAGAGGTCTTCTGCAAGATGGCTCCGTCGTCGCTGTGAAGAATCTTCACAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAAGTGGAGGTTGAAGCCATTGGGAAAGTAAGGCATAAGAATTTGGTTGGTTTGGTAGGATATTGTGCAGAAGGTGCTCGAAGGATGCTTGTTTATGAGTATGTTAATAATGGAAATTTGGAGCAGTGGCTGCACGGTGATGTAGGACCAACGAGCCCCTTGACATGGGATATTCGAATGAGAATTGCTATTGGGACAGCAAAAGGGATAGCCTATTTGCATGAAGGATTAGAACCCAAAGTTGTGCACCGAGATATAAAATCCAGTAACATTCTTTTGGATAAAAACTGGAATGCCAAAGTATCAGATTTTGGACTTGCTAAGCTCTTGGGGTCTGAGAAAACCCATGTGACCACACGTGTAATGGGAACATTTGGATATGTTGCACCTGAGTATGCAAGCACGGGTATGCTTAATGAGCGTAGTGATGTGTATAGCTTTGGAGTTCTACTAATGGAGATAATAACAGGAAGAAGCCCCATTGATTATTCAAGACCACCTGGAGAGATGAATTTGGTTGATTGGTTTAAGGCAATGGTAGCAAATCGTCGCAGTGATGAACTAGTTGATCCTTTAATTGAGATTCCACCCTCTCCGAGATCTCTGAAGCGAGTTTTACTCATTTGTCTGCGCTGTATAGACTTGGATGTCATCAAGCGACCAAAGATGGGTCAAGTTGTTCATATGCTTGAGACTGATGATTTCCCCTTTCGATCTGAGCTACGTACAATTAGAGACAAAGATCCTTTGCCTTCTCAAGCAGATGTTTCTATTAAAGTACCATATCCATCAAAGCATGCGGAAATCGTAGAAAAATCAAGATGGAGATAA 1386 0.4603 MTDSTTATTSSLSFKLLLLVAILLVTVVVILLLIFFLCFRGTRSCKKRKLVAKHSSGTIPLVSKEIMVVKASDLTPSSEPSQSEIDDVDVDPKKEADIMVEIEGTRKSDVSGGGHRSEVSVEDPNIGWGRWYTLREVELATRGFAEGNVIGEGGYGVVYRGLLQDGSVVAVKNLHNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGARRMLVYEYVNNGNLEQWLHGDVGPTSPLTWDIRMRIAIGTAKGIAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKAMVANRRSDELVDPLIEIPPSPRSLKRVLLICLRCIDLDVIKRPKMGQVVHMLETDDFPFRSELRTIRDKDPLPSQADVSIKVPYPSKHAEIVEKSRWR* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0297 461 PANTHER OS01G0323000 PROTEIN 5 461 - -
Apr5g0297 461 SUPERFAMILY Protein kinase-like (PK-like) 122 417 IPR011009 -
Apr5g0297 461 CDD STKc_IRAK 150 416 - -
Apr5g0297 461 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Apr5g0297 461 SMART serkin_6 144 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0297 461 PANTHER RECEPTOR-LIKE KINASE 5 461 - -
Apr5g0297 461 Gene3D Phosphorylase Kinase; domain 1 116 219 - -
Apr5g0297 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Apr5g0297 461 Gene3D Transferase(Phosphotransferase) domain 1 220 426 - -
Apr5g0297 461 ProSiteProfiles Protein kinase domain profile. 144 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0297 461 Pfam Protein tyrosine and serine/threonine kinase 147 415 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0297 Apr-Chr5 2640047 2643958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0297 15 418 Trihelix Transcription Factor Family AT1G70460 41.463 3.06e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Apr5g0297 PK_Tyr_Ser-Thr 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0297 - - gmx:100305442 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0297 5 2640047 2643958 Apr5g0297 5 2640047 2643958 ECH