Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0272 ATGGACGATTACGCGAGCAGCGACGACGATTACCGTTACTCCGATCGAGAAGACTCTGTCGACCCCTTTGAAAACGACGACCAAGATTTTCCTTTCCTCTCTTCCAAGGGTCCTACCACTCAGGTGATTACGAAGGAATCACTGCTGGCTGCACAGAGGGAGGATTTGCGCCGAGTGATGGACATGCTTTCAGTGAGAGAGCAACATGCTCGTACGCTTCTTATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAGGGGAAGACATTTCTGTTTGCTGAGGCTGGTGTTAGTGTGGATGAACATCGCGACTCTGACTCATCTGTTCCTTCTACAGTAATGTGCGAAATCTGCATAGAGGACATTCCTAGTCATGAAGCAACGAGAATGGATTGTGGTCACTGCTTTTGCAATTCCTGTTGGACAGAGCATTTTGTTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCACACAAGTGCAATTCCATTTGTGATGAAGCTGTTGTAAGAACTCTTCTAAGTAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTGCTTGAATCCTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAACCGTGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAGTTGCTTGTCAGAAGCACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGCGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAAGTGCCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGATACAAAGAGCAAGAGAAAACAGCTGAACGGGCAAAGAGGGATCTATATCGGTATATGCACTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGCAAACTGAAAGAGACTATACAAGGGAAGATTGCAATTTCAGAAGAAAAGGATTCTACACTTAGAGATTATAGCTGGGTAAATAATGGACTTGCCAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATGCATTTGCTTTCTACATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAAAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTATGGAGATAAGGATGCAGATCATCAACCTTTCGACAATTACTGACAAACTTTGTCAAAAAATGTATGAATGCATCGAGAACGATTTATTGGGTTCTCTCCATCTTGGCATGCATAGTATTGCTCCATATAAGTCAAAGGGGATCGAGAGGGCATCAGAACTTTCAGTTTGTTGGAGCAACAAAGATTGTTGTATATATGCTGCGAGCGTAGGTGTAACAGCAGAACTTGATAGGCCTTCTGGATCAGGGAGTTCAGATGACAGTGGATGCTCGTCTCGGAAGCGTGCTAGAAAGGAGAGTGTTGGAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1755 0.4251 MDDYASSDDDYRYSDREDSVDPFENDDQDFPFLSSKGPTTQVITKESLLAAQREDLRRVMDMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKTFLFAEAGVSVDEHRDSDSSVPSTVMCEICIEDIPSHEATRMDCGHCFCNSCWTEHFVVKINEGQSKRIRCMAHKCNSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEPCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQGKIAISEEKDSTLRDYSWVNNGLARLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVMEIRMQIINLSTITDKLCQKMYECIENDLLGSLHLGMHSIAPYKSKGIERASELSVCWSNKDCCIYAASVGVTAELDRPSGSGSSDDSGCSSRKRARKESVGGGFFDLNLPAEFVDRN* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0272 584 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Apr5g0272 584 SUPERFAMILY RING/U-box 116 203 - -
Apr5g0272 584 SUPERFAMILY RING/U-box 261 318 - -
Apr5g0272 584 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Apr5g0272 584 MobiDBLite consensus disorder prediction 543 565 - -
Apr5g0272 584 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 5 515 - -
Apr5g0272 584 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 515 IPR031127 GO:0004842|GO:0016567
Apr5g0272 584 MobiDBLite consensus disorder prediction 1 36 - -
Apr5g0272 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 205 IPR013083 -
Apr5g0272 584 SMART ibrneu5 191 253 IPR002867 -
Apr5g0272 584 SMART ibrneu5 261 326 IPR002867 -
Apr5g0272 584 Pfam Ariadne domain 330 584 IPR045840 -
Apr5g0272 584 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 -
Apr5g0272 584 SUPERFAMILY RING/U-box 191 259 - -
Apr5g0272 584 Gene3D - 249 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0272 Apr-Chr5 2370787 2375093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0272 60 541 ARIADNE family AT2G16090 71.399 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0272 K11968 - gmx:100783343 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0272 5 2370787 2375093 Apr5g0272 5 2370787 2375093 ECH