Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0261 ATGCTTCCTTCTCACCATCACCACTGGGCCCCATCTCCATCTCCTTCTCCTTCTCCCTCTCCCTCTCCAACGCCACTCATCAACAAGTCCTCCCTATCCCCGTCGTCAAAGTCGCCGGCGGTTGACTTCAGCCCCCCGCTAATAGCAATGGTCGTGGTAGTCGCCACCGCCTTTCTCGTCGTAACCTATTCCCGCCTTATCGCGCGCCACCTCAGACCTCCAGTCCACCGTCTCATCCGCCGCTTCCGACGCCGCCGATTCCTCCCCTCCTCCGTTGGCGACCTAGAGTCGCTTCCCTACGAGTCACCGTTGGATGGCCCACATGTGTTCTCTCCCTACGGTCTCGACGAGTCGGTGATCAAAACTATCCCCTTCGCTCTCTACACCGCTAAATACGACGCGAGTTTTGAAGAGTCACGCCGTGACTGCGCCGTTTGCTTGTTAGAATTCGAAGACGACGACTACGTCAGAACGCTCCCCGTTTGTTCCCACACCTTCCACGTCGACTGCATCGACGCGTGGCTTCGTTCGCACGCTAACTGTCCTCTCTGCCGCGCCGGAGTTCTCTGTGCTGATTCTCCGTTCACTCCTATGATGGCCGCCAGAATCCGACCCAGTCTCGACGACGATACCATTCTCCACCGCATCAGTATCGACCCTCTCCTCGATCCTCCACCGCCACCTTCTATCTCTGCCGTGTCCGAGATCACGCCCTGCTTCGACGACCACTCTCCCAGGAGGAACAACGTTAACGCCAATTCAGAGGATCGATTTAACACTAGGGATTTTCTCCTCAAGCGATCCTATTCGTTTGGATTTGAGCGGAGTCTCGCGTCGGAGAGGATGGTGATGGAACCGGCCACGGCTTCGCCGTGGCGGTACCGCAGAGGGAGTAGTAGTTTCTGGAGCAAGAGGCCTTCGCCGTTTGGGTCGTTGGGTAAGCCGAGGGTGTTTTCGTTCAGATATTATCGTGGGATGAAGTCGCCCTTTTTCCGGCGACGGGGGTTTTTCCCGTTGTCGGAGTCGAGCGTGAGGTACGCCGGCGGTGGAAGCTCGTCGCGGCGGAGCAAGTCGATAGCAAGTCCGATGTTTCTGAGGTCGTCGGGGGTGGCGGCGGCAGCTGGGGTGGCGGCGTTCTCGTCGAGTCGGCTGAGGTGTGGCGATCCGGAGGCGCTTCTGTCGCCGGAGAGGTTTAACAGAAGGTGA 1206 0.5854 MLPSHHHHWAPSPSPSPSPSPSPTPLINKSSLSPSSKSPAVDFSPPLIAMVVVVATAFLVVTYSRLIARHLRPPVHRLIRRFRRRRFLPSSVGDLESLPYESPLDGPHVFSPYGLDESVIKTIPFALYTAKYDASFEESRRDCAVCLLEFEDDDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDDTILHRISIDPLLDPPPPPSISAVSEITPCFDDHSPRRNNVNANSEDRFNTRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYAGGGSSSRRSKSIASPMFLRSSGVAAAAGVAAFSSSRLRCGDPEALLSPERFNRR* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0261 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 189 IPR013083 -
Apr5g0261 401 CDD RING-H2_PA-TM-RING 142 185 - -
Apr5g0261 401 SMART ring_2 143 184 IPR001841 -
Apr5g0261 401 Pfam Ring finger domain 142 185 IPR001841 -
Apr5g0261 401 SUPERFAMILY RING/U-box 129 190 - -
Apr5g0261 401 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Apr5g0261 401 MobiDBLite consensus disorder prediction 1 33 - -
Apr5g0261 401 MobiDBLite consensus disorder prediction 10 24 - -
Apr5g0261 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 370 - -
Apr5g0261 401 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 370 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0261 Apr-Chr5 2321899 2323367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0261 27 401 C3H Transcription Factor Family AT3G18930 50.856 7.11e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0261 - K19041 gmx:100795347 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0261 5 2321899 2323367 Apr5g0261 5 2321899 2323367 ECH