Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0250 ATGACTACTGCTGCCAAGAAGTACCCTGACTTCTTCAAAGTCTTCCTTCAGAAGCAACACTCAGAAAGAATGCTCATTCCAAATGCTTTTGTTAAATTGACAAGCTTACAAAGAAGGATACCTGAGAATGTCATCCTTAGAAACCGTAAAGGGAGAGTTTGGCATGTCAAAATACGTTCTATTGGTGACAAACTGTATTTTGATGATGGTTGGAAGCGTTTTCGTGAAGAAAATTCTTTAGAGGAACCAAACTTTCTCGTTTTTACATATGATGGGAGCAAAGGGTTCAAGTTCATAATCCTTGAGCTATCAACAAGTTGTGAGAAGACAACAGTAAAGGAGGAGGAGGAAGAAGGAGAAGAAAACGACCATGTGATAGAGTTGAGGGAAGAGGCGGAGAATATAGAAGAGAACATAGAAGAAGTTGAGGATTGGGTGATGGAGGATGAGGAAGAACAAACACAAGAGGAAGACAGTGATGATGATGACTATGATGGTGACAGCGACAACGATGACAATGATGATTTTGATGATGATGATTATGTAGAGATGGAAGAAGATAATGAAGGAGAATATATTGCTGGAAGCATGAGGAGCCAGTGTCGTCATAAACCCTGTAGAACTCTTGTTGTCCACAAAAGGGAGACTGCAAAAAGATCCACAAGAAAGGTTCAAGGTCCTCGAATTGAAGACTATGAAGATGAAGCAGAAATCACATTCCAACCAATGTCATTAAAGACTTTTGTCTTACCCTTCATGAAAAGATCACCCTTTTATGTTGCCAATGTCAGGATATTCAAAGACATGAAGTACGAGACTATCATCTCAACTTGCCACAACAAACAATCATCCGCAAAAGTCCCAACTCAAAGTCTCTTCCTTCCTACCCTTTTACTTCAACAAGGCAAGCGAAGAGGTGTAGGAGCCACCTCTTCAACATGTAATGCTGCATCAGCTGAGATTTTCAAGATTGCATCCATAACGAATGGCCATGTTCTTATTGGGGTTGTTATAGGATTTGTTCTTCTTCAAATCGAAGCATCTGTAGAAGAGGCTGAGTGA 1062 0.4021 MTTAAKKYPDFFKVFLQKQHSERMLIPNAFVKLTSLQRRIPENVILRNRKGRVWHVKIRSIGDKLYFDDGWKRFREENSLEEPNFLVFTYDGSKGFKFIILELSTSCEKTTVKEEEEEGEENDHVIELREEAENIEENIEEVEDWVMEDEEEQTQEEDSDDDDYDGDSDNDDNDDFDDDDYVEMEEDNEGEYIAGSMRSQCRHKPCRTLVVHKRETAKRSTRKVQGPRIEDYEDEAEITFQPMSLKTFVLPFMKRSPFYVANVRIFKDMKYETIISTCHNKQSSAKVPTQSLFLPTLLLQQGKRRGVGATSSTCNAASAEIFKIASITNGHVLIGVVIGFVLLQIEASVEEAE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0250 353 Coils Coil 118 152 - -
Apr5g0250 353 CDD B3_DNA 9 101 IPR003340 GO:0003677
Apr5g0250 353 Gene3D - 2 106 IPR015300 -
Apr5g0250 353 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Apr5g0250 353 Pfam B3 DNA binding domain 11 99 IPR003340 GO:0003677
Apr5g0250 353 SUPERFAMILY PetM subunit of the cytochrome b6f complex 319 350 - -
Apr5g0250 353 MobiDBLite consensus disorder prediction 143 180 - -
Apr5g0250 353 Hamap Cytochrome b6-f complex subunit 7 [petM]. 317 349 IPR012595 GO:0009512
Apr5g0250 353 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Apr5g0250 353 SMART B3_2 11 104 IPR003340 GO:0003677
Apr5g0250 353 PANTHER B3 DOMAIN-CONTAINING 6 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0250 Apr-Chr5 2230200 2233174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0250 9 165 REM Transcription Factor Family AT3G06220 30.573 2.41e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr5g0250 B3 6.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0250 - - aprc:113865158 568.926