Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0249 ATGCCGCACCCTTCTTTCCACAAGCTTGTTCTACCCTCCTCCTCCTCTGTCCAAACCAGACAACTGAGGCTTCCAGATAATTTTATGAGGAAATATGGGGGTGAGCTTTCTCCAATTGTTACCCTCTCCGTTCCTGATGGTAGTATCTGGCGTGTAGGATTGAAAAAGGCTGACAACAAATTTTGGTTTCTTGATGGTTGGCAAGAATTTGTTCAACGCTATTCCATTGGTGTTGGATACTTGTTGGTTTTCAGATTCGAAGGAAAGTCATCTTTCAATGTCCATATTTTCAATTTAGCTACTTCTGAGATAAGCTATCAATCAGCCGCACGAAGCAGTACAAATCGTCTTAAAATTTTTGAGGAAATGGAAGATGAAGATTCCATTGAAATCTTAGATTCATCATCTTCCCACCTTACTCCTGGCTCGTTGCAAAATAAAGCTTTTGCTGGATCAGTAGATAAAATGACTCCTGGAAAGTGTTATACACCTCCAGCATTGCAGAATCTGTTTAATGGGTCTAAACTCAATAACGTAAACTGGGGAGAGGGTGGGAATGCACATTCTTCAAAACCTGCCAATTCAATAGACAAACAGTTGACCAGAGATATAGGAGTTCAATTTAATGCAGTTGAGTTTAAAAGATCTACTGAAGAATTGAAATTGCGTGCTTCTATCGAGGAAAGGATTAAAAGAACTGCAAGAAAGAAGCGGAAATCAGATGGCCAGGAACCCTCTTCTGCTGAACACGAAGAGGAGGTGGAAATGCGCTTCAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGGGAAAAGGCCATCAATGCAGCAAAAGCATTTGAACCATCGAACCCTTTCTGTCGGGTTGTCCTGCGGCCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGCATTTGAATGGAGTTTCGGGATTCATTAAACTTCAGATATCCGATGGGAGACAGTGGCCGGTTCGCTGCCTTTATAGAGGAGGTAGAGCTAAGTTAAGCCAAGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGAGAAGGTGATGTTTGTGTGTTTGAGCTGCTTAGAATGAAAGAGGTAGTGTTGCAAGTTACTATTTTTCGAGTCACTGAGGATGTGGGGTTGTTGAGCCCTCCTTTGCAGCAGAACCAGAATGTGAGTTCAGCTAAACTGTTGAACACTCCCTTGCAGCATCAACTCACTCCAACTAAAGTGGTTAGAAATTAG 1281 0.4161 MPHPSFHKLVLPSSSSVQTRQLRLPDNFMRKYGGELSPIVTLSVPDGSIWRVGLKKADNKFWFLDGWQEFVQRYSIGVGYLLVFRFEGKSSFNVHIFNLATSEISYQSAARSSTNRLKIFEEMEDEDSIEILDSSSSHLTPGSLQNKAFAGSVDKMTPGKCYTPPALQNLFNGSKLNNVNWGEGGNAHSSKPANSIDKQLTRDIGVQFNAVEFKRSTEELKLRASIEERIKRTARKKRKSDGQEPSSAEHEEEVEMRFRFYESASARKRTVTAEEREKAINAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISDGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFRVTEDVGLLSPPLQQNQNVSSAKLLNTPLQHQLTPTKVVRN* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0249 426 MobiDBLite consensus disorder prediction 237 253 - -
Apr5g0249 426 SMART B3_2 6 100 IPR003340 GO:0003677
Apr5g0249 426 SMART B3_2 293 388 IPR003340 GO:0003677
Apr5g0249 426 Pfam B3 DNA binding domain 11 97 IPR003340 GO:0003677
Apr5g0249 426 Pfam B3 DNA binding domain 296 387 IPR003340 GO:0003677
Apr5g0249 426 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 416 - -
Apr5g0249 426 SUPERFAMILY DNA-binding pseudobarrel domain 2 98 IPR015300 -
Apr5g0249 426 SUPERFAMILY DNA-binding pseudobarrel domain 286 387 IPR015300 -
Apr5g0249 426 MobiDBLite consensus disorder prediction 232 253 - -
Apr5g0249 426 CDD B3_DNA 291 386 IPR003340 GO:0003677
Apr5g0249 426 CDD B3_DNA 4 98 IPR003340 GO:0003677
Apr5g0249 426 Gene3D - 270 391 IPR015300 -
Apr5g0249 426 ProSiteProfiles B3 DNA-binding domain profile. 293 388 IPR003340 GO:0003677
Apr5g0249 426 Gene3D - 1 100 IPR015300 -
Apr5g0249 426 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Apr5g0249 426 PANTHER B3 DOMAIN-CONTAINING 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0249 Apr-Chr5 2220682 2224453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0249 1 392 B3 DNA Binding Superfamily AT3G18990 51.870 8.23e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr5g0249 B3 4.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0249 - - gmx:100813285 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0249 5 2220682 2224453 Apr5g0249 5 2220682 2224453 ECH