Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0248 ATGGACCAGTTGCTTTTCAAGCCACCTTTTATGATTCTACAATATATATATATATATTTGACATTGAAAAACTTTTCATTTATACTCAAATACTTTAAATCTTCAATCTTGCAAAGAAACAACCCGGAGAGGTGGTAGATGGATTATCATCAGGACGTGCTATCCTTCTTCGTTATCATCAAGGATGGCCTCACCAAGCAAATAGAAGTTCCCCTGAAGTTTCTGAAGCATTTAAATGAAAAACTCACGAGTAATGCTATTCTGATTGGCCCTTCTGGTGACCAATGGCAAGTAGCTATTATCAAGAAAGGAAATGACATATACATGCAAAATGGTTGGCTACAATTTCTAAGAGACAACTCAGTGAAGCTTTATGAGCTCTTGCTTTTCACATATCATAGAAAGAACTGCTTCAGGGTTCAAATTTTTGGTAGGGATGGATGTGAGAGGCTATACCTCAAAGAAACAACACAAGAAGAAGCTGCCATCCCAAGTTTAGTGAGGAGAAAGAAGGGTAGACCAACAAAAGCTTCTGTCAATTCATTACCCCTCAATGAATCAAAGTTTTGTCAAGAAGAGCCTTTCAGCAACAAAGGCTCACTTTCTAAGGACTTACCAAAGCCTCAGATTTCAACTAAAATTGCAAGATCAGAAGCATGCAATTTGAACGAGTCTTTTACCTATGGCAAGCCTTTTTGGAAGCACCTCTTGACAAAATCTAATGTGGATGATCGGTGCTTGTTGCCCATTGCTACTGAGTTTGCAAGAAAGTATATTCCTGAATCAGTAAAAACAATCACCCTTTGGAATTTGGAAGGAAAATATTGGGAGGTGATGGTGAATTGTATTCACAGTAACAATAAAAGGTATACTCAGTTTACAAAGGGATGGGGAAAATTCGTTCGTGATAACAAGCTCAGGAGAGGTGACACTTGCATATTTGAACTTGAAGGTGGGAACCATATGAAGGTTCAAATATTCAGATGTGTACCAAGTAAATCCAGTGTCCAACAAAAGCTTAGCTTTATTTGA 1032 0.3779 MDQLLFKPPFMILQYIYIYLTLKNFSFILKYFKSSILQRNNPERW*MDYHQDVLSFFVIIKDGLTKQIEVPLKFLKHLNEKLTSNAILIGPSGDQWQVAIIKKGNDIYMQNGWLQFLRDNSVKLYELLLFTYHRKNCFRVQIFGRDGCERLYLKETTQEEAAIPSLVRRKKGRPTKASVNSLPLNESKFCQEEPFSNKGSLSKDLPKPQISTKIARSEACNLNESFTYGKPFWKHLLTKSNVDDRCLLPIATEFARKYIPESVKTITLWNLEGKYWEVMVNCIHSNNKRYTQFTKGWGKFVRDNKLRRGDTCIFELEGGNHMKVQIFRCVPSKSSVQQKLSFI* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0248 342 Gene3D - 49 147 IPR015300 -
Apr5g0248 342 SUPERFAMILY DNA-binding pseudobarrel domain 229 327 IPR015300 -
Apr5g0248 342 Gene3D - 210 329 IPR015300 -
Apr5g0248 342 ProSiteProfiles B3 DNA-binding domain profile. 52 145 IPR003340 GO:0003677
Apr5g0248 342 SUPERFAMILY DNA-binding pseudobarrel domain 50 147 IPR015300 -
Apr5g0248 342 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 55 179 IPR044837 -
Apr5g0248 342 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 208 328 IPR044837 -
Apr5g0248 342 CDD B3_DNA 54 142 IPR003340 GO:0003677
Apr5g0248 342 CDD B3_DNA 236 327 IPR003340 GO:0003677
Apr5g0248 342 Pfam B3 DNA binding domain 62 144 IPR003340 GO:0003677
Apr5g0248 342 Pfam B3 DNA binding domain 235 327 IPR003340 GO:0003677
Apr5g0248 342 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500 55 179 - -
Apr5g0248 342 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500 208 328 - -
Apr5g0248 342 SMART B3_2 55 145 IPR003340 GO:0003677
Apr5g0248 342 SMART B3_2 232 329 IPR003340 GO:0003677
Apr5g0248 342 ProSiteProfiles B3 DNA-binding domain profile. 232 329 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0248 69 180 REM Transcription Factor Family AT3G06220 31.624 1.15e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr5g0248 B3 1.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0248 - - aprc:113865156 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0248 5 2214994 2217020 Apr5g0248 5 2214994 2217020 ECH