Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0237 ATGGAAGATCATTTTTCTCCTAAGGGAAAGGGAATTGGCTATTGCAGATCTCCTCAGGTGCAGTTGGAGGAAGCAACATCATTAGATGGTGGAATGAAAAATTCAGTTTCGGAGGATATGTTTAACAACTTCTCCGAGCTCATGAACTTCGATACTTATGCTGGTTGGTGCAATAGCCCATCGATGTCTGATCAGAGTTTGGCTAATGTGTTTTCATCATTTGCGTCAGTATCATATCCACCACCTGAAGGATTGAATTTAATGGAACACGGCAATGGTCCATTGTTTATGACAGAAGTTAGTGGAAATCACAATGTTATGGAAAGTTCTCCCAGTTGTGGGGAGAGAGTTACGTTTCAACAAATGGAGATCCAACTTGGGTTTTTGGATGATGTAAATGATACAAATAACTTAGATTCAAAACAAAAACATAATGGCTCATTTCAGCAACTTAATACCTCAGGTGTGGGCAATTACATAATCTCAAGGTCATCTGGTCGGTCACTTGATGATAGAATGCTAAGGGCTTTGTCCTTCTTTAAGGAATCGGCTGATGGGGGAATGTTGGCACAAGTTTGGGTACCCATTAAGCATGGTGATGACTTCATCTTAAGCACCAGTGAGCAACCTTATTTACTAGACCCAAAGCTTGCAGGCTATCGTGAAGTGTCAAGGACATTTACATTTTCTGCAGAAGGAAAACCAGGATCATGTCCGGGGCTTCCTGGTCGTGTGTTTATATCCCATCTTCCTGAATGGACATCCAATGTTGGTTACTACAATAAAACTGAGTACTCAAGGTTGGAGCATGCAATTAATCATGAGGTTCGTGGATCAATTGCTCTTCCCATATCTGATCTGCACTCTCAAGTGCCATGCGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCCTAATTTTGACCGAGAATTAGAAATTGTTTCTCATGCTCTCCAGCTTGTAAATTTAAGGACTACTTCACCTCCGCGACTTCTTCCCCGGTGTTTATCAAATAACAAAAGAGCTGCTTTAATGGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCCTGCTGTTACAGTGAGGGAACAGATGAAACTGAGAGAATACAAATCAAAGAGGGTCATACAAGCTCTATTAAAAAATGCGTACTATGTATTGAAGAATCAGCATGCTATATAAATGATAGAGCGCTAGGAGGATTTGTTCATGCCTGTGTTGAACATCATCTAGAGGAAGGACAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAGACATATGATATTAGTGAATATCCCCTTGTTCATCATGCTCGCAAATATAATTTGAATGCTGCTGTTGCAATTAGGCTAAGGAGTATCCATACCAATAATGATGATTACATATTAGAATTCTTTCTTCCTGTCAACATGACAGGTAGTTCAGAACAGCAACTTTTACTAGACAATCTCTCAGGTACGATGCGGAGAGTTTGTAGCGGTTTGAGGACAGTTTCAGATGCTGAGTTAACAAGAAAAGAAGGTTCCCAAGTCAGATTTCAAAAGGAAAAAGCCCCAGGTTTTTTACCTATGTCCAGGAGAAACTCTCAGATAGCATCAATAAACGATGACCATGATTCCGTCCAGAAGATGTCCTTGAAGGCATCTAGCATGATAAATAATGGAATTGAAGCTGCTCACAGCCAGGAAATGAATGGATCAAGAAAGCAGGTTGAGAAAAAGAGAAGTACAGTGGAGAAAAATGTTAGCTTGAATGTTCTCAAACAATACTTTTCTGGTAGTCTGAAAGATGCTGCTAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGAAAGATTAATAAAGTTAATCGTTCATTAAAGAAGATACAGACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGAGGGTTGAAATTTGATCCTTATACTGGGGAATTTGTAGCAGGAGGATCCATCGTCCAGGAAATAGATGCACATAAATGTCTTCTGTTTAGTGAGAAAAATGCTGTGGAAGACCCTAAGCCTGCAACACAAAAAGCAGTCTCGTTACCTCCAGCACCTGGCATCACAGGTGAGGATTCAGCAATTAAGTTGAATGATGATGATGTTTGCTTGGTGGGAGGCCAGCCTGTTCACTCAAGAAGTGTACTTATCTCCAATATCAATGAGGGAAAATTGAAGAAAGACATTGCTTCTTCTGCTGATTGTGGTGAACATTCAAAATCGATGGCCATGAATGGATCATGCCACACAGCCTGCCTCTGGACCCAGGCTCAGGATTGTCCTGAACAAACTAGTTTGGGGTCAGTTCTTGAAAAAGAGGGAAATAAATGGGGTTTGAACATGAGCAGTCTGGGAGAAGAAAATTCTATCCGTGATATTGCCTGTCATAGTTCCATCTCCTTGATTACTGATGAGGTTGAAGTTGGTGTGGATGGGGGTGAAGGAGCTGATGAACAAAACCACCCCACTTCCTCAAGCATGACAGACTCATCCAATGGCTCTGGCTCAATGGTGCATGGCAGTTCATCAGGGTCTCAGAACTTTGAGAACCAGAAGTATTCAAAAATCAAATCAACTTTTGTTGATAGTGGGTCAAAAATTATTGTCAAAGCTACCTATAGGGGAGATACAATTCGTTTCAAGTTTGATCCATCTTCAAGTTGTTTTCAGCTATATGAAGAAGTTGCCGCGAGGTTCAAATTACAATATGGGTCATTCCAGCTCAAATATTTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTACAAGAATGTATAGAAATTTTGGATGATATCGGCACTCGTTGTGTGAAGTTTCTTGTTCGTGACATGCCTAGCATTTTAAGCAGCAATAGCAGTAACAGTTGCTTCTTGTCAGACAGCTCATAG 3003 0.4089 MEDHFSPKGKGIGYCRSPQVQLEEATSLDGGMKNSVSEDMFNNFSELMNFDTYAGWCNSPSMSDQSLANVFSSFASVSYPPPEGLNLMEHGNGPLFMTEVSGNHNVMESSPSCGERVTFQQMEIQLGFLDDVNDTNNLDSKQKHNGSFQQLNTSGVGNYIISRSSGRSLDDRMLRALSFFKESADGGMLAQVWVPIKHGDDFILSTSEQPYLLDPKLAGYREVSRTFTFSAEGKPGSCPGLPGRVFISHLPEWTSNVGYYNKTEYSRLEHAINHEVRGSIALPISDLHSQVPCAVLELVTTKEKPNFDRELEIVSHALQLVNLRTTSPPRLLPRCLSNNKRAALMEIIDVLRAVCHAHRLPLALTWIPCCYSEGTDETERIQIKEGHTSSIKKCVLCIEESACYINDRALGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDISEYPLVHHARKYNLNAAVAIRLRSIHTNNDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRVCSGLRTVSDAELTRKEGSQVRFQKEKAPGFLPMSRRNSQIASINDDHDSVQKMSLKASSMINNGIEAAHSQEMNGSRKQVEKKRSTVEKNVSLNVLKQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGEFVAGGSIVQEIDAHKCLLFSEKNAVEDPKPATQKAVSLPPAPGITGEDSAIKLNDDDVCLVGGQPVHSRSVLISNINEGKLKKDIASSADCGEHSKSMAMNGSCHTACLWTQAQDCPEQTSLGSVLEKEGNKWGLNMSSLGEENSIRDIACHSSISLITDEVEVGVDGGEGADEQNHPTSSSMTDSSNGSGSMVHGSSSGSQNFENQKYSKIKSTFVDSGSKIIVKATYRGDTIRFKFDPSSSCFQLYEEVAARFKLQYGSFQLKYLDDEEEWVMLVNDSDLQECIEILDDIGTRCVKFLVRDMPSILSSNSSNSCFLSDSS* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0237 1000 MobiDBLite consensus disorder prediction 844 882 - -
Apr5g0237 1000 SMART PB1_new 900 982 IPR000270 GO:0005515
Apr5g0237 1000 CDD PB1_NLP 901 981 IPR034891 -
Apr5g0237 1000 SUPERFAMILY CAD & PB1 domains 895 984 - -
Apr5g0237 1000 MobiDBLite consensus disorder prediction 852 882 - -
Apr5g0237 1000 ProSiteProfiles RWP-RK domain profile. 581 669 IPR003035 -
Apr5g0237 1000 PANTHER PROTEIN NLP8 5 997 IPR045012 GO:0003700
Apr5g0237 1000 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 997 - -
Apr5g0237 1000 Gene3D - 897 979 - -
Apr5g0237 1000 ProSiteProfiles PB1 domain profile. 900 982 IPR000270 GO:0005515
Apr5g0237 1000 Pfam PB1 domain 903 981 IPR000270 GO:0005515
Apr5g0237 1000 Pfam RWP-RK domain 601 649 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0237 Apr-Chr5 2139523 2146457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0237 1 996 NLP Transcription Factor Family AT2G43500 48.527 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Apr5g0237 PB1 8.7e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0237 - - aprc:113864503 1957.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2398 2 28644126 28649143 Apr5g0237 5 2139523 2146457 PCT