Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0228 ATGCCGCTTCCGACGAAACCAACGAGGGCAATTCCGGAAGCCGGCAAGGACTCCGACGAGTCGGTGGCTCCGTCCAACAACCTCTGGGTAGGGAATCTGGCGCCGGACGTCACCGACTCGGATCTGATGGACCTCTTCGCCCAATACGGTGCGCTCGACAGCGTCACATCCTATTCCGCACGCAGTTACGCTTTCGTGTTCTTCAAACGGGTCGAAGACGCCAAAGCCGCAAAGAACGCTCTACAAGGCTTCTCTCTCCGCGGCAGTTCCTTGAAGATTGAATTTGCCAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGATGAATTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGATTTTAAGTTCTTTAGAGACCGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTACTCAGGCAATGAAAATCATGAATGGGAAACGAATAGGTGGGGAGCATATTCGTGTGGATTTCCTTCGGTCACATTCTACAAAAAAGTTGCTTGATTATGGGCAGTTCCAAGGAAAAAGCTTGGGGCCTACTGATACTTATTCTGGACAGAAAAGACCGCTGAATTCACAGCCTCCAATGGGGAGGAAAGGTGATAGTCAACCAAGTAATATTTTGTGGATCGGTTATCCTCCTGCTGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATTAAGAGTTTTCCTTCAAGGAATTATTCATTTGTTGAATTTAGAAGTGTTGATGAAGCTCGGCGTGCGAAAGACGGCCTCCAGGGACGCCTTTTTAATGATCCACGAATAACAATTATGTATTCAAGCAGTGACCTAGTACCTGGCAAAGATCACCCAAGCTTTTTCCCTGGAAGTAATGGGCCAAGACCTGATGTATTTCTGAATGAGCATCCATTTCGACCATTACAAATGGATGCATTTGGTCATAATCATCCAATGGTTCCTGGACAGTTACCACCTAGTGGTATTATTGGATCAAACGTACCAATGCGACCTTTTGGTCCTCATGGTGGTGTTGAATCCGTTAATTCAGGCCCTGAATTTAATGAGATTAGTGCACTCCACAAATTTCAGGATGGGAGCTCCAAGAGTACCATGGCTCCAAACTGGAAAAGGCCATCTCCTCCAGCACCAGGGATGCTTTCTTCTCCTGCACCTGCTGTTAGGCTTCCTACAAGATCAGTCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGAATAGATGGCACTTTTCCTGTTGATGATTCTCCATTTCCCTTGAGGAATATAGATGATAATGGGCTAGCTCTAGAACAAACGTATGGGATTGATCCAGCTATTGATGGAGGTGGTTCAGGTCCATATGTAAACATTCAAGGAAAGAGTCACCTTGGTCCAGTGAGCACAAGGATTACAGCTGGAGTACATGGTTCTGTGCAACCTGATATTGACCACATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTCCCTATTGGGAAAGGGATTGGGACTGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACGGGATTGGATATACTTACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTCCCTGATAGTGAAGATGATTTTGCTTCATATACTGAATTCCTTCGCTATCTTAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTGGATAACACCACCTTATTCTTGGTGCCTCCTTCTGATTTTCTTACTAAAGTTTTGAAAGTCACTGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTTCCAAATAGTGCACCCATGCAACAATCATCACATTTCCCTGTACCATCAACTCAGTATATGCAGCAGATTCCTCCTTCGCAAGCTGAATATGGTTTGATTCCTGTAAAAGAGGAACAGGTTTTGCCAATGGATTATAACAGATCATTGCATGAGGATACTAAGCTTCCTGCTAAACCAGTCTTTCCACTGACAGGTGGGCACTTGTCAGTTCAGTCTGTGCCCACAGATTATGCTTCTAATACTGCTGCTGCTGGGTCCCAAGCCGGAGTTGCTTTGACACCAGAGCTTATTGCAACTTTAGCTTCTTTACTCCCTGCAACTACACAATCATCTGCCACCGATGGTGCTAAGCCAGCAGTAGGCTCCTCAACCATGAAGCCTCCACTTCCTCCTGTGGCACCAAATGATGGAAATCAATCTCATTTATGGAAACAGGATCATCAAATTGCAGATCAATCCACTCATCCTTCTCAACAGTTGAGGACTATGTATAACATTCACAATGCTCACTATCAGCCTTATCCACCGGCATCTGCTTCTGGCCACACTGCTCAAGTGGTGTCAGGCAGTTCTCATATTCAAGACCCCACTGCCAGTATGCAGCAGCAGGGTGCTGTTCCATCGAGACATATGTCTAATTTCATGATACCTACTCAAAGTGGACAGGTAGGTGTATCCCCCCATGCCAGCCAGCAGTATCAAATCGAAGTCTCCCCCAACACTCAGAAAGGCTTTGGAGTGGTGCAGGGAACAGATACACCTGTTTTATACCATGCTCAGGCATTCCAGCAATCTAATAATTCTATTGCCTTACCTAATCAAGCTAACAGTGCTAATCCTTCACAGCAACAAACTGTGATGCCATATACAGTGGACCAAGTAAACTCAGACACCCTCAATCAGCAACTTCCTGTTTTTGGAGTTGGTCAAGGCACATCAGAAGTGGAGGCTGATAAGAACCAGCGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAGCAGCAGCAACAGCCAGCCCCGGGAGGACATGGGCCAGGATTTCAACAATGA 2973 0.4494 MPLPTKPTRAIPEAGKDSDESVAPSNNLWVGNLAPDVTDSDLMDLFAQYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGFSLRGSSLKIEFARPAKPCKQLWVGGISPAVTKDELEAEFRKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKRIGGEHIRVDFLRSHSTKKLLDYGQFQGKSLGPTDTYSGQKRPLNSQPPMGRKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKDGLQGRLFNDPRITIMYSSSDLVPGKDHPSFFPGSNGPRPDVFLNEHPFRPLQMDAFGHNHPMVPGQLPPSGIIGSNVPMRPFGPHGGVESVNSGPEFNEISALHKFQDGSSKSTMAPNWKRPSPPAPGMLSSPAPAVRLPTRSVSGAWDVLDINHIPRDSKRSRIDGTFPVDDSPFPLRNIDDNGLALEQTYGIDPAIDGGGSGPYVNIQGKSHLGPVSTRITAGVHGSVQPDIDHIWRGIIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPNSAPMQQSSHFPVPSTQYMQQIPPSQAEYGLIPVKEEQVLPMDYNRSLHEDTKLPAKPVFPLTGGHLSVQSVPTDYASNTAAAGSQAGVALTPELIATLASLLPATTQSSATDGAKPAVGSSTMKPPLPPVAPNDGNQSHLWKQDHQIADQSTHPSQQLRTMYNIHNAHYQPYPPASASGHTAQVVSGSSHIQDPTASMQQQGAVPSRHMSNFMIPTQSGQVGVSPHASQQYQIEVSPNTQKGFGVVQGTDTPVLYHAQAFQQSNNSIALPNQANSANPSQQQTVMPYTVDQVNSDTLNQQLPVFGVGQGTSEVEADKNQRYQSTLQFAANLLLQIQQQQQPAPGGHGPGFQQ* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0228 990 Gene3D - 12 100 IPR012677 -
Apr5g0228 990 Gene3D - 101 180 IPR012677 -
Apr5g0228 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Apr5g0228 990 Pfam SPOC domain 507 624 IPR012921 -
Apr5g0228 990 SUPERFAMILY RNA-binding domain, RBD 11 100 IPR035979 GO:0003676
Apr5g0228 990 CDD RRM3_Spen 223 292 - -
Apr5g0228 990 PANTHER RNA RECOGNITION MOTIF-CONTAINING 5 989 - -
Apr5g0228 990 MobiDBLite consensus disorder prediction 1 23 - -
Apr5g0228 990 MobiDBLite consensus disorder prediction 186 219 - -
Apr5g0228 990 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 5 989 - -
Apr5g0228 990 MobiDBLite consensus disorder prediction 383 406 - -
Apr5g0228 990 Gene3D - 211 304 IPR012677 -
Apr5g0228 990 CDD RRM3_Spen 105 174 - -
Apr5g0228 990 SMART rrm1_1 222 290 IPR000504 GO:0003723
Apr5g0228 990 SMART rrm1_1 27 94 IPR000504 GO:0003723
Apr5g0228 990 SMART rrm1_1 104 171 IPR000504 GO:0003723
Apr5g0228 990 MobiDBLite consensus disorder prediction 190 215 - -
Apr5g0228 990 MobiDBLite consensus disorder prediction 744 793 - -
Apr5g0228 990 CDD RRM3_Spen 28 97 - -
Apr5g0228 990 SUPERFAMILY RNA-binding domain, RBD 100 187 IPR035979 GO:0003676
Apr5g0228 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Apr5g0228 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 91 IPR000504 GO:0003723
Apr5g0228 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 287 IPR000504 GO:0003723
Apr5g0228 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Apr5g0228 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 294 IPR000504 GO:0003723
Apr5g0228 990 SUPERFAMILY RNA-binding domain, RBD 205 295 IPR035979 GO:0003676
Apr5g0228 990 MobiDBLite consensus disorder prediction 774 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0228 Apr-Chr5 2064255 2077128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0228 25 284 Eukaryotic Initiation Factors Gene Family AT4G34110 22.456 9.17e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0228 - - gmx:100777570 1686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2388 2 28563797 28573857 Apr5g0228 5 2064255 2077128 PCT