Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0216 ATGGGGCACAGTTCAAAGAAGAAGAAGCGCGGAGGAGGGAGTGGTCGCCGGAGTAAGGCTAGAACGCAGTCCAAAGATCACGTTTCTCAATTCGGCGCCGATGATAACGATCAGCTTTCCGAAGAGGTTACCGCATTATGCGCAATTTTTGAAGAAGACTGCAAAATTCTTCCAGGATCGCCACCTCAAATAGTTATTAAGCTTAGGCCATACTCAAAGGACATGGGTTATGAGGACGTAGATGTTTCTGCTGTTCTTGTTGTTAGGTGCTTGCCTGGGTATCCCTTCAAGTGCCCGAAGTTGCAGGTTACTCCTGAAAAAGGGTTATCAGAAACTGATATTAATAAGCTTTTGTCTCTACTCCACGATCAGGCTAATTTAAATGCTAGGGAGGGGCGTGTTATGATCTTTAATTTGGTTGAGGCTGCTCAAGAATTTCTTTCTGGAATTGAGCCAACAGTCAAATCAACTGAATCTATGCTTTTGCACTCAGCTATGGAAAGCAATGAAGAATTGTTTCCCAAGGATGTGGCATCTTCAAATAAGAATCGTTCTTTTGTTTATGGTTTTATAGACCTTTTCAGTGGCTATGGAGAGTCATGGAGTTGGGGTTTTGGAATGGACGAAACTGCTGGAAAAAGTTTGCTTCATCCCTCTAAGTCTGATGCCTCAAAATCACATTTAGGTGCCCGGGAGAAGAAACCTGATAGTAAGGAAACACCGTTAATAATGCCAGAACTTCCTGCTAAATTAGATACTGTTGGAGAAGTTAGTGAAGACAGCAAAAATAGCTTATCTTTGACTCATTCAAGTAGATCTTTGGTGGAGGATTTTGTAGAGAATGACTACAAAGGTGAGAAAGAGTATTTTATTGTTGATGAGTATAAAGCAGAAGATAATGAAGGTATGTTTAAAAGTGAGTCTTCAGATTCTCAATCTTCTGCATCCTTGCCTCATCACCAACCATCTCAAACAGTTGAAAAGGATCTCATAATGGTTCACATGCTTCGCCATGTTTGTGCTTCTAAAGGAGCATTGGCTGACTCTTTGCCACAAGTGGTGACAGAGCTGTACAATTTAGGGATCATTTCTGACCTGGCACGTGATATGGCCTCTGAACCACCTTCCATTTTCAACAAAACCTTTGATAGTGTTTTTGAGAAACACCAGGCTTCATCCTGTATATCTCAATTCTGGAAACCTTCTGATATTGGAGGCTCAGCCACACTTCCCCACAGTTCTCGATATTTGAATGATTTTGAGGAGCTAAGGCCACTTGGTCATGGTGGTTTTGGTCATGTTGTATTGTGCAAAAATAAACTTGATGGAAGGCAGTACGCAGTGAAGAAAATCCGCCTGAAGGACAAAAGCATGCCGGACCGAATATTAAGGGAAGTGGCTACACTTTCTCGTTTACAGCATCAACATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTTCTAATTCTTATGGTGATTCTGCTTGGGGTTCAAAGACTCCAGTGAGCTCTACTTTCAGCTATAAAGCTGCAACCTCCAATGATGCCTTTGGGCATGAGAGTCAGCTTGAATCAACTTACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCGCCAGGTGTTTGAATCATATAATCATTTTGACAAAGAATATGCATGGCATTTATTTCGCCAAATAGTGGAAGGCCTGGCACACATACATGGACAAGGAATAATTCATCGGGACTTAACACCAAGTAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAATTCTTGAAGTTGGAGCAGCTGGATCAAGATTTGGGCCATCCTGCTGATACCACTGGAGTTTCCATTGATGGCACTGGACAAGTGGGGACTTATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGACATGTTGTTTTATCTGATCTGAAGCTGAAAGGGGAACTTCGACCTGCTTGGGTTGCTGAGTTTCCAGAACAAGAATCCTTGCTGCGGCAGTTAATGTCTGTGGGTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTGCAAAATGCATTTCCTCCACGAATGGAGTCTGAATTATTGGATGATATTCTACGAACAATGCAGAAATCAGAGGATATGAGTATATATGATAAAGTTTTAAATGCTATCTTTGATGAAGAGATGTTAAGCACAAAACACATTCGTCAGGTTGGTAGGTTGGGGTCAGTTGGAGATAAAAGTTCATCCATTCAGTGCACAGAATTCGAAACTGAGGTTCGAGATTATGTTGTAGAGGTAAACAGGGAAATTTTCAGACAGCATTGTGCAAAGCACCTAGAAATATCGACAATGAAATTATTGGATGATTGTCCACAGTTTAATAGAAATGCAGTTAAACTTCTGACCCATGGAGGAGACATGCTTGAACTTTGCTATGAGTTGCGTTTGCCTTTTGTGTACTGGATTATATTTAACCAGAAATCTTCATTCAAACGCTATGAGATATCATGTGTCTTCAGAAGAGCAGTTGGACATTCATCACCAAATCGCTACCTTCAGGGAGACTTTGATATTATTGGTGGTACCTCAGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGACATAATCACTTGTTTTTTTCATGAAGACTCATGTGACATTCATCTAAATCATGGTGACCTCCTGGATGCAATTTGGTCATGGATTGGAGTCAAGGTAGAACATAGACTCAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGCCCACAATCCTCAGAAAGGAAATCAAAGTGGGTAGTTATAAGGAGGCAGCTTTTGCAGGAATTAAATTTAGCAGAGGCTATGGTAAATAGGTTACAGACAGTAGCTTTAAGATTTTGTGGATCTGCAGATCAGGCACTCCCCCGATTAAGAGGAGCTCTTCCATCCGATAAACGTACATTCAAGGCACTTGATGAATTGTCTGAGCTTGTTAGTCTCTTGAGAATTTGGAGGATTAACAAAAATATCTATATAGATGCACTAATGCCACCGACTGAAAGTTATCATAGAGATATGTTTTTTCAGGTATACTTGAGGAAAGAGCACAGTCCTGGATCACTCTCTGAAGGTGCCTTGCTGGCCGTTGGTGGTCGATATGACTATTTGCTTCATCAGTTGTGGAGTAGTGACTATAAAGGAAATCCCCCCACTGGTGTGGGGACTAGCCTTGCTCTGGAGACAATAATTCAGAATTGTCCTCTAGATTTTAAGCCCAATAGAAGTGAAGCCAGCACCAATATTCTTGTCTGTTCAAGAGGAGGAGGTGGTCTGTTGGTGGAGCGCATGGAGCTAGTTGCTGAATTATGGGAAGAGAACTTTAAGGCTGAATTTGTTCCTACCCGTGATCCAAGTCTTACAGAGCAGTATGAGTATGCTAATGAACATGATATCAAATGTCTTGTCATCATCACTGATACAGGGTTCTCCCTGACAGATTCTGTTAAGGTTCGACACCTTGAACATAAAGGGGAGAAAAACGTTGAGAGAGAAAACCTTGTCAAGTTTTTATCAGATGCTATGGCAACACAATTTAGAAATCCCTCCATTTGGATCTGA 3705 0.4148 MGHSSKKKKRGGGSGRRSKARTQSKDHVSQFGADDNDQLSEEVTALCAIFEEDCKILPGSPPQIVIKLRPYSKDMGYEDVDVSAVLVVRCLPGYPFKCPKLQVTPEKGLSETDINKLLSLLHDQANLNAREGRVMIFNLVEAAQEFLSGIEPTVKSTESMLLHSAMESNEELFPKDVASSNKNRSFVYGFIDLFSGYGESWSWGFGMDETAGKSLLHPSKSDASKSHLGAREKKPDSKETPLIMPELPAKLDTVGEVSEDSKNSLSLTHSSRSLVEDFVENDYKGEKEYFIVDEYKAEDNEGMFKSESSDSQSSASLPHHQPSQTVEKDLIMVHMLRHVCASKGALADSLPQVVTELYNLGIISDLARDMASEPPSIFNKTFDSVFEKHQASSCISQFWKPSDIGGSATLPHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSNSYGDSAWGSKTPVSSTFSYKAATSNDAFGHESQLESTYLYIQMEYCPRTLRQVFESYNHFDKEYAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPADTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKLKGELRPAWVAEFPEQESLLRQLMSVGPSDRPSATELLQNAFPPRMESELLDDILRTMQKSEDMSIYDKVLNAIFDEEMLSTKHIRQVGRLGSVGDKSSSIQCTEFETEVRDYVVEVNREIFRQHCAKHLEISTMKLLDDCPQFNRNAVKLLTHGGDMLELCYELRLPFVYWIIFNQKSSFKRYEISCVFRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIITCFFHEDSCDIHLNHGDLLDAIWSWIGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAEAMVNRLQTVALRFCGSADQALPRLRGALPSDKRTFKALDELSELVSLLRIWRINKNIYIDALMPPTESYHRDMFFQVYLRKEHSPGSLSEGALLAVGGRYDYLLHQLWSSDYKGNPPTGVGTSLALETIIQNCPLDFKPNRSEASTNILVCSRGGGGLLVERMELVAELWEENFKAEFVPTRDPSLTEQYEYANEHDIKCLVIITDTGFSLTDSVKVRHLEHKGEKNVERENLVKFLSDAMATQFRNPSIWI* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0216 1234 Gene3D Transferase(Phosphotransferase) domain 1 539 731 - -
Apr5g0216 1234 MobiDBLite consensus disorder prediction 306 321 - -
Apr5g0216 1234 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Apr5g0216 1234 MobiDBLite consensus disorder prediction 302 321 - -
Apr5g0216 1234 MobiDBLite consensus disorder prediction 1 35 - -
Apr5g0216 1234 PANTHER EIF-2-ALPHA KINASE GCN2 23 1234 - -
Apr5g0216 1234 ProSitePatterns Protein kinases ATP-binding region signature. 426 450 IPR017441 GO:0005524
Apr5g0216 1234 Pfam Anticodon binding domain of tRNAs 1129 1226 IPR024435 -
Apr5g0216 1234 CDD STKc_EIF2AK4_GCN2_rpt2 413 720 - -
Apr5g0216 1234 Gene3D Phosphorylase Kinase; domain 1 409 536 - -
Apr5g0216 1234 SMART RWD2001b 41 150 IPR006575 GO:0005515
Apr5g0216 1234 Pfam Protein kinase domain 420 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0216 1234 PANTHER HISTIDYL-TRNA SYNTHETASE 23 1234 - -
Apr5g0216 1234 SUPERFAMILY UBC-like 36 147 IPR016135 -
Apr5g0216 1234 SUPERFAMILY Class II aaRS and biotin synthetases 788 1113 IPR045864 -
Apr5g0216 1234 Coils Coil 971 991 - -
Apr5g0216 1234 Gene3D Ubiquitin Conjugating Enzyme 29 158 IPR016135 -
Apr5g0216 1234 ProSitePatterns Tyrosine protein kinases specific active-site signature. 575 587 IPR008266 GO:0004672|GO:0006468
Apr5g0216 1234 Pfam Histidyl-tRNA synthetase 870 1111 IPR041715 -
Apr5g0216 1234 MobiDBLite consensus disorder prediction 216 245 - -
Apr5g0216 1234 Gene3D - 1125 1224 IPR036621 -
Apr5g0216 1234 Pfam RWD domain 38 147 IPR006575 GO:0005515
Apr5g0216 1234 Gene3D Bira Bifunctional Protein; Domain 2 783 1117 IPR045864 -
Apr5g0216 1234 MobiDBLite consensus disorder prediction 1 16 - -
Apr5g0216 1234 ProSiteProfiles Protein kinase domain profile. 420 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0216 1234 SUPERFAMILY Protein kinase-like (PK-like) 416 730 IPR011009 -
Apr5g0216 1234 MobiDBLite consensus disorder prediction 224 240 - -
Apr5g0216 1234 SUPERFAMILY Class II aaRS ABD-related 1129 1224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0216 Apr-Chr5 1961989 1984857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0216 408 723 MAP Kinase Kinase Kinase AT1G63700 25.767 8.50e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Apr5g0216 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0216 K16196 - gmx:100797996 2168.66