Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0212 ATGTATCCAAAGAGGTCTGGCTCTGGCCAAGATGGCCCTGTTTCCAGACAGGTGCGCACAAGTGATAGGATCAAGACAAGGTCAAACATTTATGGACGGTCATTCTTGTATTACAATCCAAATCTTAGGCGCACCAGGAAAAGCAAGATCAAGACAAGGACTGCAGCTTCACAGATTGCTAAGATGTTGCGTCCAGGGAGTCGGAAATCACAAGATTCAAACACTAATTCTGGTTCTGCCAACCTTCGGCGTTCAACTAGGAAGAGAAGGCTTAATGTAAATCTTGAAGATTTTACCGACAGTTCAGGAGCTGAAGACGAAGACTTAATGAGACCTGCATATCAACCATTGAGAAACCGGATTAGCAATAGTGTTAGCCAAGATGGTTTGATGTCTACCAAGCGCAAAAGAGCAGTGGAGACTAAACCGACACCTCGACGTGAAGGTCTACGTCCTCGTCGTTCAAAGGCTGTTGCAATGGAACGGCTAATCTCAGAATCAGATGATGAGCAAGACCTTTCAGACGAAAAGGTTGAACAGGATGATACAGAAAATGGAAATGATGCTGATGAAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGATGCTGAGGGTGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGTTATGATCTTCGCAATCGTTCAGATGTCCGGAGGTTCTCTATGGAGGAAGGAAAGGCCCGGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGTACTAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGCTTAGCAAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTCCATGGGGGCGAGGTGGCAGCAGATCTGGCCCACCTTGGCTTTTTGGTGGCTTAGACATGCATGGAACAACAGCTTGGGGTTTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCATTGACTAATCTAACTTCAGGGATTCAGACTGCTGGACCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGATTGATGATAGTGTTAGTTTTAATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTCACAAGTTACCACATAACTCCTCCTAGGGGGGTGTTGTTATGTGGGCCTCCTGGCACAGGGAAAACGTTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCAGGCCAGAAGGTTAGCTTCTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCAATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCAAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGGCAAGTTGTCTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCTTTACGACGCCCTGGTAGATTTGATCGAGAGTTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAGATATTAGACATTCATACTCGTAAGTGGAAGCATCCTCCTACAAATGAACTGAAAAAGGAACTTGCAGCTAGTTGCGTAGGTTACTGTGGGGCTGACCTAAAGGCTCTTTGTACTGAAGCTGCCATCCGTGCATTCCGTCAAAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTCATAGATGTCGATTCTGTCAAGGTAGAAAAGTATCATTTTATTGAAGCTATGTCTACGATTACTCCTGCTGCTCATAGGGGAGCTATTGTACACTCTAGACCATTGTCTCTAGTAGTTCAACCTTGTCTCCAGAGACATCTAGAAAAAGCGATGAGTATTATATCTGACATTTTCCCTCCAGTTTCCATTGCATCAGAATTGACCAAACTTTCGATGCTTTCCTATGGTTCTGCAATTCCACTTGTATATCGGCCAAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAATTTCCTGTACATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGACACCAGAAGAGGCGTTGGTACATATATTTGGTGAAGCTAGAAGAACAACACCATCAATTCTCTATTTACCACAATTTGATGTTTGGTGGGAGACTGCCCATGAACAACTCAGGGCTGTTCTCCTGACTTTGTTAGAAGAATTACCATCTGACTTGCCTATCTTACTACTTGGTACATCTTCAGTTGCGCTTGCGGAAGTCGAGGAAGTGCCTCCATCTGTTTTCCCACACCGTTCAGTTTATCAAGTGAATATGCCATCTGCCAAAGATAGGACTTTCTTTGTCAATCGTTTGATAGATGCTGCTATGTCAGTAGTATTGGAGGGAATCAACAAGAAATCCCAGGATACAGGATGCATCCCTGAACTTCCCAAGGCACCAAAATTGGCCAGTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGTAGATTGCGAATGTGCCTTAGGGATATTTGCAACCGGATATTGTATGACAAACGGTTTAATGCTTTCCATTATCCAGTATCAGATGAAGATGCACCAAATTATCGCTCAATTATACAGAACCCAATGGACATGGCTACCATCCTGCAGCATGTCGATAATGGCCACTATATTACATGTGCTGCATTCATGCAAGACATTAATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGAAGATTACAATGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTCAGTGATGCGGTTCATGGAATGCTCTCACAGATGGATCCTGCACTGGTTGCATACTGCGACAAGATTGCTGGCCAAGGTGGCCCAGTACAGTTGTCTGATGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTGCAGATGGGTACTGCTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAAAGTTATGAAGCATTGAGGCGAACTAAGAAGATGGCTGATGTGCATGCAGAAGACAAGTCACAACAAGATTCTGTACCATCAAAGCCTTCCCAGGAGCATCAGGCGACTGACACAAATTCTGAAGGGCTGGAACCTGTGTTGATTGAAGGCAATTCGCATGGAATTTGTACTAATAGCCTTGCTGATGGCGACAGTCCTGATGATGTCACAATGCTTGATGCTGAATTTTCAAGTCAAGTGGAGTCTGTCAAGCAGCTTTTTGTTAAGCGTAGTGAAAATTACAGCATTCCACAACTTGAAAGGCTGTATTCGAGAATTATGAAGGGTGTGTTTGAAACCAAAGATAAAGGGGTGAATGAGGATCTTAAGAATTTGGTTTTGAACTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3606 0.4395 MYPKRSGSGQDGPVSRQVRTSDRIKTRSNIYGRSFLYYNPNLRRTRKSKIKTRTAASQIAKMLRPGSRKSQDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPAYQPLRNRISNSVSQDGLMSTKRKRAVETKPTPRREGLRPRRSKAVAMERLISESDDEQDLSDEKVEQDDTENGNDADENDADDGQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEEGKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLDMHGTTAWGLNLAASGWGHQGDALTNLTSGIQTAGPSSKGGADIQPLQIDDSVSFNDIGGLSEYIDALKEMVFFPLLYPDFFTSYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPTNELKKELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFLIDVDSVKVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFPPVSIASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALAEVEEVPPSVFPHRSVYQVNMPSAKDRTFFVNRLIDAAMSVVLEGINKKSQDTGCIPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATILQHVDNGHYITCAAFMQDINLIVSNAKAYNGEDYNGARIVSRACELSDAVHGMLSQMDPALVAYCDKIAGQGGPVQLSDELGDSTFPATPVVQMGTATRMSARLRHVQPEVNMDQSYEALRRTKKMADVHAEDKSQQDSVPSKPSQEHQATDTNSEGLEPVLIEGNSHGICTNSLADGDSPDDVTMLDAEFSSQVESVKQLFVKRSENYSIPQLERLYSRIMKGVFETKDKGVNEDLKNLVLNFLLNFVEDDANF* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0212 1201 MobiDBLite consensus disorder prediction 117 131 - -
Apr5g0212 1201 MobiDBLite consensus disorder prediction 47 294 - -
Apr5g0212 1201 SUPERFAMILY Bromodomain 896 1010 IPR036427 GO:0005515
Apr5g0212 1201 SMART AAA_5 414 555 IPR003593 -
Apr5g0212 1201 MobiDBLite consensus disorder prediction 133 167 - -
Apr5g0212 1201 MobiDBLite consensus disorder prediction 1084 1102 - -
Apr5g0212 1201 ProSitePatterns AAA-protein family signature. 523 541 IPR003960 GO:0005524|GO:0016887
Apr5g0212 1201 PANTHER AAA DOMAIN-CONTAINING 1 1195 IPR045199 -
Apr5g0212 1201 Pfam Bromodomain 908 979 IPR001487 GO:0005515
Apr5g0212 1201 MobiDBLite consensus disorder prediction 226 256 - -
Apr5g0212 1201 PANTHER BNAC08G44480D PROTEIN 1 1195 - -
Apr5g0212 1201 MobiDBLite consensus disorder prediction 168 225 - -
Apr5g0212 1201 Gene3D - 688 847 IPR027417 -
Apr5g0212 1201 PRINTS Bromodomain signature 930 946 IPR001487 GO:0005515
Apr5g0212 1201 PRINTS Bromodomain signature 946 964 IPR001487 GO:0005515
Apr5g0212 1201 PRINTS Bromodomain signature 964 983 IPR001487 GO:0005515
Apr5g0212 1201 Gene3D - 376 646 IPR027417 -
Apr5g0212 1201 MobiDBLite consensus disorder prediction 1068 1103 - -
Apr5g0212 1201 MobiDBLite consensus disorder prediction 1 25 - -
Apr5g0212 1201 Pfam ATPase family associated with various cellular activities (AAA) 418 553 IPR003959 GO:0005524|GO:0016887
Apr5g0212 1201 CDD AAA 698 810 - -
Apr5g0212 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 915 IPR027417 -
Apr5g0212 1201 MobiDBLite consensus disorder prediction 1068 1083 - -
Apr5g0212 1201 Gene3D - 554 639 - -
Apr5g0212 1201 CDD AAA 414 553 - -
Apr5g0212 1201 SMART bromo_6 898 1005 IPR001487 GO:0005515
Apr5g0212 1201 ProSiteProfiles Bromodomain profile. 921 983 IPR001487 GO:0005515
Apr5g0212 1201 MobiDBLite consensus disorder prediction 67 82 - -
Apr5g0212 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 643 IPR027417 -
Apr5g0212 1201 CDD Bromo_AAA 898 1008 - -
Apr5g0212 1201 Pfam AAA+ lid domain 580 617 IPR041569 -
Apr5g0212 1201 Gene3D - 890 1018 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0212 Apr-Chr5 1927282 1936180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0212 364 618 Calmodulin-binding Proteins AT3G56690 36.680 2.23e-42 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0212 K22531 - gmx:100787765 2066.2