Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0208 ATGAGACACTTACCTCAACACCCTAACATTGTTTCTTTCAGAGAAGCTTATGAAGATAAAGATGCGGTTTATCTTGTTATGGAGCTTTGTGAAGGTGGCGAACTCTTTGATAGGATCGTTGCTAAAGGACATTACACCGAGCGTGCTGCTGCTAATGTTACCAAAACCATACTTGATGTCTGCAAGGTGTGCCATGAGCACGGAGTAATACATAGGGACTTAAAACCTGAAAATTTCTTATTTGCAGATGCAAATGAGTCTGCTCCATTGAAGACAATTGATTTTGGCCTTTCCACCTTCCATGTACCTGGTGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCTGAGGTTTTGAGGCGTAACTATGGACCAGAAATAGATGTGTGGAGCACAGGTGTAATCCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAAGTGAGGAAGGAATTGCGCAGGCAATCATCCGAGGTAAGTTGGATTTCACTCGAGATCCTTGGCCTAAAGTTTCAGAGGAAGCAAAACACTTGGTTAAGCGTATGCTTGATCCAAATCCATACACTCGGATAACAGGTCAAGAAGTCCTTGAACATTCCTGGATACAAAATAAGGATCATGGTCGAACTATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCCTGATGAACAGATTCAAAAAGAAGGTTCTTAGAGTGGTAGCCGATAACCTGCCAGATGAGCAAGTTGATGGGTTTAAGCAAATGTTCCAAACTATGGACAAGGACAAAAATGGAAACTTGTCATTTGAAGAGCTCAAAGATGGGCTTTCAATGATTGGACACGTCATTCCTGATCATGATGTCCAAATGTTAATGGATGCTGCAGATATTGATGGAAACGGCACCCTCAGTTGTGAAGAGTTCATAACAATGAGTGTTCATCTGAGAAGAATTGAAAGTGATGAGCATCTGTCTGAAGCATTCCGTTACTTTGACAAGAATCAAAGCGGATATGTTGAGTTTGAGGAGTTGAAAGAAGCCTTGTCAGATGATGAGTCAGAAGCCAGTGATGACCAGGTGATCAAAGACATTCTAAATGATGTTGACTTGGATAAGGATGGACGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCTTCTCGCCAGTATTCAAGGGCATTGCTAAGTGCATTAAGCTTCAAGATGTTTAAAGACACATCTAACAAATCTGTGAAGTGTAACTAA 1278 0.4108 MRHLPQHPNIVSFREAYEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILDVCKVCHEHGVIHRDLKPENFLFADANESAPLKTIDFGLSTFHVPGERFSEIVGSPYYMAPEVLRRNYGPEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIRGKLDFTRDPWPKVSEEAKHLVKRMLDPNPYTRITGQEVLEHSWIQNKDHGRTISLGDQVRMRIKQFSLMNRFKKKVLRVVADNLPDEQVDGFKQMFQTMDKDKNGNLSFEELKDGLSMIGHVIPDHDVQMLMDAADIDGNGTLSCEEFITMSVHLRRIESDEHLSEAFRYFDKNQSGYVEFEELKEALSDDESEASDDQVIKDILNDVDLDKDGRISFEEFKAMMKTGGDWKMASRQYSRALLSALSFKMFKDTSNKSVKCN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0208 425 ProSiteProfiles EF-hand calcium-binding domain profile. 322 357 IPR002048 GO:0005509
Apr5g0208 425 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 1 405 - -
Apr5g0208 425 ProSiteProfiles EF-hand calcium-binding domain profile. 286 321 IPR002048 GO:0005509
Apr5g0208 425 CDD EFh 326 389 IPR002048 GO:0005509
Apr5g0208 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Apr5g0208 425 ProSitePatterns EF-hand calcium-binding domain. 299 311 IPR018247 -
Apr5g0208 425 ProSitePatterns EF-hand calcium-binding domain. 263 275 IPR018247 -
Apr5g0208 425 CDD STKc_CAMK 1 206 - -
Apr5g0208 425 SUPERFAMILY EF-hand 235 401 IPR011992 -
Apr5g0208 425 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0208 425 ProSiteProfiles EF-hand calcium-binding domain profile. 250 285 IPR002048 GO:0005509
Apr5g0208 425 Pfam Protein kinase domain 6 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0208 425 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Apr5g0208 425 Gene3D - 216 391 - -
Apr5g0208 425 SMART efh_1 326 354 IPR002048 GO:0005509
Apr5g0208 425 SMART efh_1 254 282 IPR002048 GO:0005509
Apr5g0208 425 SMART efh_1 290 318 IPR002048 GO:0005509
Apr5g0208 425 SMART efh_1 363 391 IPR002048 GO:0005509
Apr5g0208 425 Pfam EF-hand domain pair 267 317 IPR002048 GO:0005509
Apr5g0208 425 Gene3D Transferase(Phosphotransferase) domain 1 35 215 - -
Apr5g0208 425 ProSitePatterns EF-hand calcium-binding domain. 372 384 IPR018247 -
Apr5g0208 425 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 405 - -
Apr5g0208 425 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0208 425 SUPERFAMILY Protein kinase-like (PK-like) 1 219 IPR011009 -
Apr5g0208 425 Pfam EF-hand domain pair 325 389 IPR002048 GO:0005509
Apr5g0208 425 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Apr5g0208 425 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0208 Apr-Chr5 1893835 1896945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0208 1 416 EF-hand Containing Proteins AT2G31500 73.923 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr5g0208 Pkinase 2.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0208 K13412 - gmx:100818929 785.408