Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0207 ATGGACTCCGAGGATGATATGCACGACGCCAACGACATGGAGTCTCTCGATGACGATTTCTACAGTGGCGAGACTGAGGATGCTCCCATGGACTACTACAGCGACTACGATGACGACGCCGATGATTGCTTCGACGATGCCGACGGGATTCAGTCCCGTCGCCCGGAGCAAAATTTTACCGTCTTGAAGGAATTCGATATTCGATTAAGACAGGAAGATGACATCAGTAGAGTAGCAACGGTTCTTTCCATATCAAGAGTTCATGCAAGCATACTGCTTCGTCACCATAATTGGAGCATCAGTAAAGTGCATGATGCATGGTTTGCTGACGAAGAACGAGTCCGAAAAACAGTTGGCTTGTTGGAGAAACCGATTGTCCAGTTTCCCAATGCTAGAGAGCTTACTTGTGGCATCTGTTTTGAAAACTATCCTCGTTCTCGGATTGAAATGGCTTCTTGTGGTCATCCCTACTGTATCTCATGCTGGGAAGGGTATATCAGCACATCCATTAGCGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTATTAGCATCTGATGAAGATAAACAAAAGTATGCTCGTTACCTTCTTAGATCTTATATTGAAGACAATAAAAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTCTCTTGCCTCTGTTCATATAGTTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACAGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGATGCATGCACATGACATGCACTCCGCCCTGTAAATTTGAATTTTGCTGGCTTTGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGCTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTACGATGATGCTGAAAGAAGAAGAGAAATGGCAAAAAATTCATTGGAAAGATACACCCATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTCGCAGATCTACACCAGATGCAGACTGTTCATATTGAGAAGCTTAGTGACGTACAGTGTCAGCCTGAGTCACAGCTCAAGTTCATAACGGAGGCCTGGTTGCAGATAATTGAGTGTAGGCGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCGGAGCATGAGCATGCAAAAAAACAGTTCTTTGAATACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCCATTCCTCCTTGCTGATGGTCCATCTAGAGAATTCAATGACTTCCGTACAAAGTTAGCTGGATTGACTAGCGTGACTCGAAACTACTTTGAGAATTTAGTGAGGGCATTAGAGAATGGTCTATCTGATGTGGATGGTAATGGAGCTGCCTTCACCCGAGCAACAAGCTCAAAGAATGTTGCTGGGAGCAGTAAGGGGAGAACTGGAAGAGGAAAGGGAACTTTCCGAACCAGCATGTCCAGCAGAATGTCTGATGATAATCATTGGTGTTGCGAGCATTGTACCTATGCAAATGCCAATTCTGCCACCACATGTCAGATGTGCTATCAACAGCGTTGA 1761 0.4458 MDSEDDMHDANDMESLDDDFYSGETEDAPMDYYSDYDDDADDCFDDADGIQSRRPEQNFTVLKEFDIRLRQEDDISRVATVLSISRVHASILLRHHNWSISKVHDAWFADEERVRKTVGLLEKPIVQFPNARELTCGICFENYPRSRIEMASCGHPYCISCWEGYISTSISDGPGCLMLRCPDPTCGAAVGQDMINLLASDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDVQCQPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLLADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDGNGAAFTRATSSKNVAGSSKGRTGRGKGTFRTSMSSRMSDDNHWCCEHCTYANANSATTCQMCYQQR* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0207 586 SUPERFAMILY RING/U-box 132 217 - -
Apr5g0207 586 MobiDBLite consensus disorder prediction 529 552 - -
Apr5g0207 586 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 534 - -
Apr5g0207 586 Pfam Ariadne domain 354 515 IPR045840 -
Apr5g0207 586 ProSiteProfiles Zinc finger RING-type profile. 136 180 IPR001841 -
Apr5g0207 586 Pfam IBR domain, a half RING-finger domain 205 267 IPR002867 -
Apr5g0207 586 Pfam IBR domain, a half RING-finger domain 284 332 IPR002867 -
Apr5g0207 586 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Apr5g0207 586 SUPERFAMILY RING/U-box 286 334 - -
Apr5g0207 586 SMART ibrneu5 271 341 IPR002867 -
Apr5g0207 586 SMART ibrneu5 205 267 IPR002867 -
Apr5g0207 586 MobiDBLite consensus disorder prediction 1 32 - -
Apr5g0207 586 CDD RING-HC_RBR_TRIAD1_like 136 186 - -
Apr5g0207 586 ProSiteProfiles Zinc finger RanBP2 type profile. 559 586 IPR001876 -
Apr5g0207 586 SUPERFAMILY RING/U-box 206 274 - -
Apr5g0207 586 ProSiteProfiles TRIAD supradomain profile. 132 345 IPR044066 -
Apr5g0207 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 216 IPR013083 -
Apr5g0207 586 Gene3D - 263 518 - -
Apr5g0207 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 534 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0207 Apr-Chr5 1884839 1892550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0207 17 586 ARIADNE family AT1G65430 70.377 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0207 K11968 - gmx:100784195 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2368 2 28453724 28459387 Apr5g0207 5 1884839 1892550 PCT