Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0196 ATGTCGTCAACCACCGCATCCGGCGGAGACTCTCCCTCTCGCCACCTCGACACGCCGACGCTAGACAGGGAGTACTCGGCGCTGCTCCACGCCATTTCCGAGCACGGAGGCTATGCCTACGTCAGCATGGCGGCGCTAGCTGCCGGGGGTGAATTTCGCGCGGCGGAGGCGGCGCGCGAGATGGCGTGGGAGCAGCTGCACTCGGGGCCGTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCCATGGCGTGCCTCCACGTGGCGAAGCACCACTACGGCAACGGCGAGTTCAAAGAGGCTCTAAGGGTTTTGGATATGGGAATCATCATGGGAGGGACGCTACTCAGAAGGGATTTGGACTCTGCCGTTGAGAAAGTGTCCGAAGAAACAAGGAGCGTTAGGGTTTCTGATTTGGGAAACTCCGAGCATCGACTCGTTGCTCACGATTTTGATGTGATTGAGGTGCTCCAACTTTTACCTGTCAAGTCCCTTTATTCTAAGCTTGTGGTGAAGAAGTCCGCGCCATCATTGGAAAAATTCCTCAAAGATCATTACCTGTCTGGCTCCCCAGTTGTTATTAGTGATTGTATGGTTCACTGGCCAGCCAAGATGAAATGGAATGATGTTGATTACTTGCTAAGAGTTGCTGGTGACCGCACAGTTCCGGTTGAGGTTGGGAAGAACTATTTATGTGCAGAGTGGAAGCAAGAGCTAATTACATTTTCAGAGTTTCTTCAGCGGCTAAAGTCTGATGACTGTTCTCCCGGTGGTCCTACATATCTAGCTCAGCATCCATTATTTGACCAGATAAATGAGCTTCGGAAAGATATCTTTATCCCTGACTATTGTTTTGCTGGCGGAGGGGAGCTACAATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACACCATTACACCATGATCCACATCATAACATACTGGCTCAGGTTGTTGGGAAAAAATACATTAGGCTTTACTCATCATCTTTGTCTGAGGAACTTTTCCCCTACTCTGGTACCATGCTTTGCAATTCTAGCCAAAATTTCTTGTTTTTGAAGGTTGATTTAGATGACATAGATGAAAGGAAGTTTCCCAAGGTGCAAGACTTGGAATTTGTAGACTGTATTCTAGAGGAGGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTAACTACCAGTTTATCGGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCGGATGCATCCTAA 1257 0.4932 MSSTTASGGDSPSRHLDTPTLDREYSALLHAISEHGGYAYVSMAALAAGGEFRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKHHYGNGEFKEALRVLDMGIIMGGTLLRRDLDSAVEKVSEETRSVRVSDLGNSEHRLVAHDFDVIEVLQLLPVKSLYSKLVVKKSAPSLEKFLKDHYLSGSPVVISDCMVHWPAKMKWNDVDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFLQRLKSDDCSPGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELQSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELFPYSGTMLCNSSQNFLFLKVDLDDIDERKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSDAS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0196 418 SMART cupin_9 261 417 IPR003347 -
Apr5g0196 418 PANTHER - 37 411 - -
Apr5g0196 418 Gene3D Cupin 170 410 - -
Apr5g0196 418 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 37 411 - -
Apr5g0196 418 ProSiteProfiles JmjC domain profile. 270 418 IPR003347 -
Apr5g0196 418 SUPERFAMILY Clavaminate synthase-like 176 410 - -
Apr5g0196 418 Pfam Cupin-like domain 181 411 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0196 Apr-Chr5 1759114 1763990 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0196 165 409 Acyl Lipid Metabolism Gene Families AT3G45880 25.338 9.53e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr5g0196 Cupin_8 3.1e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0196 K24444 - gmx:100813075 733.021