Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0191 ATGGAGTCAGATCTTCAGCAGCACCCTCCAATGTTTCTGGATCACCAGCAACAGATGAATTCAGGGTTGACACGGTACCGATCAGCTCCAAGTTCGTATTTTTCGAGCATCATTGACCGTGAGTTCTATGAGCACGTCTTCAATCGCCCCTCTAGTCCTGAAACGGAGCGAATGTTGACACGGTTTGTGAATAGTCTTGGTGGGGGTGATGTTGATGCTGATGCTGATGCTGAGGATTCAGTTTCACTCACTCAGAATCTCCCACCTGTTCAGCAACAGCAAGTTTCTGTGGTTAAAGAAGAGGTTAACCAGCAATCTCAGGCCTTGACATCAATAAATAATGAACCTGTGGTTCTTCACCAACTACACCAAAGTAATATCAATAGTTATGGTTCTTCTGCGCCTCGGAATTTTTACCAAAACACTGGACGACCACCTTTGCCAAATCAGATGAAGACTGGTTGTGGAACTAGTTCCAATCTTATCAGGCATGGTAGCTCACCTGCTGGACTGTTTTCAAACATTAACATTGAAAGTGGCTATGCTGCTGTAAGAGGCATGGGAACTATGGGAGCTGTTAATAACACTAGTGAGGAAGTAAACTTTTCAACTCCAACGAGGTTGAAGAATGCATCAAATTACTCTTCAGGACTAATGTCATCAAGGGCTGAAATTGTGAACAAGAGCAATACACAGAATAATCCAGAAAATGAAGGGTATGCTGAAAGCCAGGGTAATGATTTTATCTCAGGTTTCCCTGTGGGTCCATGGGATGAGTCCACAATCATATCTGACAACATGACTGGTCTAAAAAGATATAGAGAAGATGATGTAAAACCATTTTCTGGTTTAAATGCAGCTGAAAATCAGAATGAAACTGGAGGCCAGCCTCCTGCTGCTCCTTTGGCTCATCACTTGAGTTTGCCAAATACTACAGCAGAAATGGCAGCCATTGAGAAGTTTCTTCAACTCTCAGATTCTGTTCCTTGCAAAATTCGCGCCAAGAGGGGATGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTCGTCCCAAACATGGATAAGCAAACAAACACTGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAAGCAAGTTCAGACTCTTTCAGACAATCGCACTAAGTGTACGTGTTCACACAAGCAGCAGCAATAA 1233 0.4307 MESDLQQHPPMFLDHQQQMNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDVDADADAEDSVSLTQNLPPVQQQQVSVVKEEVNQQSQALTSINNEPVVLHQLHQSNINSYGSSAPRNFYQNTGRPPLPNQMKTGCGTSSNLIRHGSSPAGLFSNINIESGYAAVRGMGTMGAVNNTSEEVNFSTPTRLKNASNYSSGLMSSRAEIVNKSNTQNNPENEGYAESQGNDFISGFPVGPWDESTIISDNMTGLKRYREDDVKPFSGLNAAENQNETGGQPPAAPLAHHLSLPNTTAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQKQVQTLSDNRTKCTCSHKQQQ* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0191 410 SMART finulus 344 394 IPR011598 GO:0046983
Apr5g0191 410 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 407 - -
Apr5g0191 410 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 407 - -
Apr5g0191 410 Coils Coil 378 398 - -
Apr5g0191 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 401 IPR036638 GO:0046983
Apr5g0191 410 Gene3D - 339 410 IPR036638 GO:0046983
Apr5g0191 410 Pfam Helix-loop-helix DNA-binding domain 343 389 IPR011598 GO:0046983
Apr5g0191 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 388 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0191 Apr-Chr5 1717560 1722492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0191 1 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.190 1.52e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g0191 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0191 - - gmx:100803833 638.647