Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0184 ATGGACCATGACAAGACTGGATGCCAAGCACCTCCTGAAGGTCCTATATTGTGCATTAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCTAAATGCCACAAAGACATGATGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAACGGGTCATCAAGCAGCACTGAAAATGAACCTGTTGTTGCTGCTAATGTTGATATCCCAGTTATTTCAGTAGAGCCTAAAATTGTCTCTCTGCAGCCATTATTTGCTTCAGGTTCAGAGGAGAGTGCTGAACCAAAGCCAAAGGATGGTCCAAAACGTTGCAGCAGCTGCAACAAGCGAGTTGGTTTAACAGGGTTTAATTGTCGATGTGGCAACCTTTTCTGTGCTGTTCATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCTAGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATATAA 519 0.4412 MDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMMLKQEQAKLAASSIGNIMNGSSSSTENEPVVAANVDIPVISVEPKIVSLQPLFASGSEESAEPKPKDGPKRCSSCNKRVGLTGFNCRCGNLFCAVHRYSDKHNCPFDYRTAARDAIAKANPVVKAEKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0184 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Apr5g0184 172 Gene3D - 94 168 IPR035896 -
Apr5g0184 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Apr5g0184 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Apr5g0184 172 Gene3D - 4 70 - -
Apr5g0184 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Apr5g0184 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Apr5g0184 172 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 172 - -
Apr5g0184 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Apr5g0184 172 SUPERFAMILY AN1-like Zinc finger 98 167 IPR035896 -
Apr5g0184 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Apr5g0184 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0184 Apr-Chr5 1651184 1654119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0184 8 172 C2H2 Transcription Factor Family AT3G52800 43.030 6.76e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0184 - - gmx:100499857 327.02