Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0180 ATGGGAACAACGGCGATCGAAGAAGTGCGAACTTTATGGATTGGGGATTTACAGTATTGGGTTGATGAGTCTTATCTTTCTCAGTGCTTCGCTCACAGCGGCGACGTCGTTTCCATCAAAATCATACGCAACAAGATGACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTCTCCCACGCCGCAGCCGAAGCCTTTCTTCTCACTTACAACGGCACTCAAATGCCCGGCACTGAACTAACCTTCAGACTCAATTGGGCCTCTTTCGGCGATTCTGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCTCCTGATGTCACCGATTTCCTTCTCCAAGAGACTTTCCGGGCCCATTACCCTTCCGTTAAAGGCGCTAAAGTAGTCACAGACCCCGTTACGGGCCGCTCCAAGGGATATGGATTTGTTAAGTTCTCTGATGAGACCCAAAGGAACCGTGCCATGACCGAAATGAACGGTGTTTATTGCTCCACTCGCCCAATGCGTATCAGTGCCGCTACCCCTAAGAAGAACACTTCGTTTCAACATCAATATGCTCCTCCTAAAGCAACATATCCGTTTCCGGCATACACTGCACCGGTCAATACTGTTCCACCAGAAAATGATATGAATAATACCACTATTTTTGTTGGTAACTTGGATCTTAATGTGACTGAGGAGGAGCTTAAGCAAAGCTTTCTGCAATGTGGAGATATTGTGTCTGTCAAAGTTTATGCTGGCAAAGGATATGGTTTTGTTCAATTTGGGACTAGAGCATCTGCTGATGATGCCATTCAGAGGATGCAGGGGAAGATGATAGGTCAACAAGTGGTCCAGATCTCTTGGGGTAGTAACTTAGTAGCTAGACAGGACTTAGCTGGGGGCTGGGGGCAACAGATGGATCCAAATCAATGGAGTGCCTACTACGGATATGGACAAGGTTATGAAGCATATGCCTATGGTGCTACTCACGATCCTTCCTTGTATGCTTATGGTGCGTATGCTGGTTATGCACAATACCCTCAACAGGTTGAAGGTGCTCAAGACATGTCAGCAGTGTCTATGCCTATGGAGGAATCATATGATCCCCTAGCAATGCCTGACGTCGATAAGTTAAATGCTGCATATCTTTCAATACATGGAAGTGCCATTTTAGGGCGGTCCCTTTGGCAGAAGACCTCGGCGTCATTACAGCAAGCTTAG 1206 0.4818 MGTTAIEEVRTLWIGDLQYWVDESYLSQCFAHSGDVVSIKIIRNKMTGQPEGYGFVEFVSHAAAEAFLLTYNGTQMPGTELTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPVTGRSKGYGFVKFSDETQRNRAMTEMNGVYCSTRPMRISAATPKKNTSFQHQYAPPKATYPFPAYTAPVNTVPPENDMNNTTIFVGNLDLNVTEEELKQSFLQCGDIVSVKVYAGKGYGFVQFGTRASADDAIQRMQGKMIGQQVVQISWGSNLVARQDLAGGWGQQMDPNQWSAYYGYGQGYEAYAYGATHDPSLYAYGAYAGYAQYPQQVEGAQDMSAVSMPMEESYDPLAMPDVDKLNAAYLSIHGSAILGRSLWQKTSASLQQA* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0180 401 CDD RRM1_SECp43_like 11 91 - -
Apr5g0180 401 Gene3D - 96 173 IPR012677 -
Apr5g0180 401 Gene3D - 200 288 IPR012677 -
Apr5g0180 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 5 344 - -
Apr5g0180 401 SUPERFAMILY RNA-binding domain, RBD 95 185 IPR035979 GO:0003676
Apr5g0180 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Apr5g0180 401 CDD RRM2_SECp43_like 96 175 - -
Apr5g0180 401 SUPERFAMILY RNA-binding domain, RBD 7 82 IPR035979 GO:0003676
Apr5g0180 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Apr5g0180 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Apr5g0180 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Apr5g0180 401 Gene3D - 9 89 IPR012677 -
Apr5g0180 401 SUPERFAMILY RNA-binding domain, RBD 195 315 IPR035979 GO:0003676
Apr5g0180 401 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 5 344 - -
Apr5g0180 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 286 IPR000504 GO:0003723
Apr5g0180 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Apr5g0180 401 SMART rrm1_1 11 84 IPR000504 GO:0003723
Apr5g0180 401 SMART rrm1_1 215 282 IPR000504 GO:0003723
Apr5g0180 401 SMART rrm1_1 98 172 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0180 Apr-Chr5 1621935 1624543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0180 9 303 Eukaryotic Initiation Factors Gene Family AT2G23350 26.384 1.68e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0180 - - gmx:100813616 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0180 5 1621935 1624543 Apr5g0180 5 1621935 1624543 ECH