Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0177 ATGAGGAAGCCTGAGCCATCTGGAAAAAACAACTCCAATAACAAGCTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTGGCCAGAAATGCCGGCCTTCAAAGGTGTGGCAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACCACAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCTGGGCGAACAGACAATGAAATTAAGAACTTTTGGAACTCAACAATAAAGAAAAGACTCAAGAACTTGTCTTCCACAACCTCACCAAACGCAAGCGAGTCTTCATATGAGCCTAAGTTTACTACTTGTACGCAAGATCATCATGCTGATTTTATGCCTATGTTCAGTTCATCATCTCCATCATCATCAATGCATGCCACAGTTCTCAATTCCATAATTGACAGGTTGCCCATGCTAGAGCATGGACTAAACATGCCAGTTCCTGCTAGTACTGGATTCTTCAACGCTACTGGGCCATGCTTCTCACACAGTAGTGGAGTTGACAACAAAGGTTTTTATATGGAAAAAGGAGGAGTATTTGGAAGTGGGGCAGAAGGGGATATGTATATTCCTCCTCTAGAGAGTGTTAGCACTTTTTCTGACCATAACCTTAAAGTGGAGAGTACATGCAACACAGATACTAACAATAGTTACTTTGATGACATAAATAGTATCGTTAATAATTGCAACGTTAGCAACAATAAGAAAGGTGAGAATAGAGCTGGGGTGGAAAATTTATTTCAAGAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCATCGTTTCCTTTTCTTGATTTTTCAAACTGA 948 0.4167 MRKPEPSGKNNSNNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTTSPNASESSYEPKFTTCTQDHHADFMPMFSSSSPSSSMHATVLNSIIDRLPMLEHGLNMPVPASTGFFNATGPCFSHSSGVDNKGFYMEKGGVFGSGAEGDMYIPPLESVSTFSDHNLKVESTCNTDTNNSYFDDINSIVNNCNVSNNKKGENRAGVENLFQEELTMGEWDLEELMKDVSSFPFLDFSN* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0177 315 MobiDBLite consensus disorder prediction 1 20 - -
Apr5g0177 315 Gene3D - 72 142 - -
Apr5g0177 315 PANTHER MYB DOMAIN PROTEIN 55 8 314 - -
Apr5g0177 315 CDD SANT 21 65 IPR001005 -
Apr5g0177 315 Gene3D - 15 71 - -
Apr5g0177 315 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Apr5g0177 315 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Apr5g0177 315 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Apr5g0177 315 SMART sant 70 118 IPR001005 -
Apr5g0177 315 SMART sant 17 67 IPR001005 -
Apr5g0177 315 PANTHER MYB TRANSCRIPTION FACTOR 8 314 - -
Apr5g0177 315 CDD SANT 73 113 IPR001005 -
Apr5g0177 315 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Apr5g0177 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Apr5g0177 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Apr5g0177 315 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0177 Apr-Chr5 1602105 1604614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0177 1 313 MYB Transcription Factor Family AT3G08500 43.658 1.37e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g0177 Myb_DNA-binding 9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0177 K09422 - gmx:100786151 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2332 2 28167467 28170075 Apr5g0177 5 1602105 1604614 PCT