Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0157 ATGACTTGTTGCTTTCATCTTTTCAGAAAGAAAGGGTCTTCCTCAGCCACACGCTTGACGGGAGTTGATATAGATATTTCAGAAATTCAGAATGTAAATATTTACACTTACAAGGAATTGCGAATTGCCACTGAAGGTTTTAGTCTCGCAAACAAGATAGGGCAGGGAGGTTTTGGATCTGTCTATAAGGGAAAGCTGAGAGATGGTTCTCTGGCAGCTATAAAGGTTTTATCAGCAGAATCGAGACAAGGGGTTCGCGAGTTCTTGACAGAAATCAAGGTGATCACTAGTATAGAGCATGAGAATCTAGTTAAGTTGTATGGGTGCTGTGTGGAAGACAACCACAGGATTTTGGTGTATGGATATCTTGAGAATAACAGCCTAGCACAAACACTTCTTGGTGCAGGCAATAGTAGCATCCAATTCAGCTGGCATGTAAGGAGGAACATTTGCATAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCAGCCACAAATTATTCACAGAGACATAAAAGCAAGCAATGTACTATTAGACCAACACCTCCATCCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAATCTTACCCATATTAGTACACGTGTTGCTGGAACAGCTGGTTATTTGGCACCTGAGTATGCAATAAGAAATCAAGTGACAAGAAAATCCGATGTCTATAGTTTTGGAGTTCTGCTATTAGAAATTGTTAGTGGGAGGCCCAACACAAACAGACGTTTACCTGTTGAAGAACATTACCTTCTTACAAGGGCATGGGATTTGTATGAGGGAAGAGAACTCGAAAGATTAGTGGATGCTTTTCTAGATGGGGACTTCAATATTGAGGAGGCAGTAAGGTTTTGTAAGATTGGTCTCCTTTGCACACAGGATTCTCCTCAGTTCCGGCCTTCTATGTCCACTGTTCTTGACATGCTTTTAGGTGAAAAAGATGTGAGCGAGGAGAATATGACAAAACCAGGGATGATATTTGAATTTGTGGAAGCCACAAATGAAGGGAAACAAAAAGGCAAGGCTGAAGTGGATAGAACATCTTTGTTGGTTGGTTCAGGGAAGCCAGACGAGTCATCATCATCCGGAACTGTGAGCTCTTATGCTACCATGACCTTCACAGCGATTTATGATCGAAGCAACTAG 1173 0.4211 MTCCFHLFRKKGSSSATRLTGVDIDISEIQNVNIYTYKELRIATEGFSLANKIGQGGFGSVYKGKLRDGSLAAIKVLSAESRQGVREFLTEIKVITSIEHENLVKLYGCCVEDNHRILVYGYLENNSLAQTLLGAGNSSIQFSWHVRRNICIGVARGLAFLHEEVQPQIIHRDIKASNVLLDQHLHPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPVEEHYLLTRAWDLYEGRELERLVDAFLDGDFNIEEAVRFCKIGLLCTQDSPQFRPSMSTVLDMLLGEKDVSEENMTKPGMIFEFVEATNEGKQKGKAEVDRTSLLVGSGKPDESSSSGTVSSYATMTFTAIYDRSN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0157 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Apr5g0157 390 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 376 - -
Apr5g0157 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Apr5g0157 390 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Apr5g0157 390 CDD STKc_IRAK 53 318 - -
Apr5g0157 390 MobiDBLite consensus disorder prediction 347 374 - -
Apr5g0157 390 PANTHER RECEPTOR-LIKE KINASE 1 376 - -
Apr5g0157 390 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Apr5g0157 390 SUPERFAMILY Protein kinase-like (PK-like) 25 318 IPR011009 -
Apr5g0157 390 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0157 390 Pfam Protein kinase domain 49 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0157 390 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0157 Apr-Chr5 1366604 1369562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0157 25 335 Receptor kinase-like Gene Family AT1G56120 53.333 1.06e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr5g0157 Pkinase 6.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0157 - - gmx:100797257 679.863