Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0145 ATGCATGTAATTTTACCTCGGAATAGTGAAGCTGATGTGAGTTCTGATGTTAAGGGCATAATAGGAGCTATTTTAGATGGCAGCTCTCGCATTGGCCAAGAGCAAGCAGTGGCTATGAAGCTGACATTGGAAGACTTTCATCATAATAGCAATCAGAGTTTTACTTTGCATGTTAGAGACTCTAAAGGGGATCCTCTTCTGGCAGCTATTGCAGCTAAAGATCTTATTGATAATCAAAAGGTGCAAGCAATCGTTGGACCACAAACATGGGAAGAGACATCTTTAGTGGCTGACGTATGCAACCAAAGGAGCATACCCCTCCTTTCTCTAGCAGATACAACTCCAAAATGGGCAATAGAGAAGTGGCAATTCCTGCTCCAATCCTCGCCTAGCCAAGTCATGCAGATGAAAGCTATAGCTGAAATTGTCAAGTCTTGGAATCTCTACAAGGTAAGCATAATATATGAAGATGGAGACTCATCCTCCGCTGAAGTTTTACCTCAGCTCTATGAAGCTCTCACAGAAGTTGGCACAGAGTTAAGCAATGTTCTAGCCATTCCACCTTTTGTTTCCTCTTCATTGTCTCAAGAACTTGAGAAGCTAAGGGGAGGGCAATGTAGAGTCTTTATTGTCCATTTATCCCTTCCTTCGGCACTGCACCTTTTTGAAACTGCCAAAAGAACGAATATGATGGAGGAAGGTAATGTATGGATTAGTACTAGTACCTTTACAAACCTTGTTCATTCCTTGAATACATCCACTATCTCCAATTTGCAAGGGATTATTGGAGTCAAGAGCTATATTCCAAATCTATGGCACCAATATGCAAACTTCTACCATAGATTTCGTAGAGAATTTAGCTCAGCGAATTTTGAAGAGTATAATTATGAGCCCGGGATCTTTGCAGCCCAAGCTTATGATGCCGCATGGACTGTGCTTCAGGCAATGAGGGAAACCAAACCAAAACAGGGTCAACTTTTTCTAAACAAGATTTTGCTTAGCAATTTTACTGGTTTAAGTGGGAAAATTCAGTTCACTGATAAAAAATTATCTCCAGCGCGTACTTTTCAAATCATTGACGTGATTGGGAGGAGCTACAGGGAAATTGGTTTCTGGTCAGATGGACATAGTTTCTCAAAATCTTTGGACCAAAATGCTTCTTATAGTTCTTTTGTGAAGGAATTTGGAAAAATGATCAATCCAACATGTTCTAAACGACTAAGAATTGGTGTCCCCTCTACATCAACATTCAAACAGTATGTCGATGTTACTCAAGATCATTCAGAAAAAGTTACTTCCTTCGAGGGATTTGCTATAGATCTTTTCGAAGAAACCGTAAAAAAATTGCCATACCATCTGGAATATGAGTTTTTTGCCTTTAATGGCACATATGATGATTTGGTGAAGCAAGTTTATTATAAGAAATATGACGCAGTTGTTGGTGATGTAGCAATAGTGTCCTCGCGTTATGAATATGTTTCATTCACTCAGCCCTATACTGATCCAGGAGTGGTGATGATTGTTCCTGTTAAACCGAAGACAGGCAATAGAGCATGGCTATTCATGAAGCCTTTTACAAAGCTCATGTGGGTTCTAATATTAGTCATCATTTTCTACAATGGCTTTGTTGTATGGATGATTGAAAGAAACCACTGCCCTGAGCTTAAGGGGCCTATTCTGCATCAAACAACAACTATGCTGTGGTTGGCTTTCTTTTCTCTTTTCTCTTTGAATGGGGACAGGTTACACAGCAATTTATCAAGGGTTGCAATGGTGGTCTGGCTTTTTGTGGCTCTAATCATTACACAGACCTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACGGTTTGAACCAACCGTAGACAGCATTCAGGTGCTCAAGAACAGCAATGCCAAGGTAGGATATGATAGAGGATCCTACTTGAAAAGATATATCCAGGATGCATTGGGCATCAATGCTGAAAACATCAAGCAATTCAACTCATCAGAGAACTATGCTGAGGCCTTCAGAAACAAAGAAATAGCAGCTGCCTTCCTTGACATTCCTGAGGCCAAAATTTTCCTGGCAAAGCACTGTAAAGGGTTTACTCGAGGGCCTGCATACAAAGTTGGAGGATATGGATTTGTGTTTCCAAAGGGATCGCCATTGATTCATGGTGTAAACCAAGCCCTACTAAACATATCTGAAAATGGCACACTACGTGATCTAGAAAACAGTATGCTTGCATCAGAAGAATGCAAAGATGTAGACCCAGGTGCAGAAACTACTAGTCTTAGCCCTGGCAGCTTCATGAGAACAATGTGGAGTCTAATGACGGCTGTGATTAAACGTTGGCGATCTAGAAAGAGACTATTATCAGGAAGAATCCACAATGTGGCAGAAAATCCTTTAAACTCTTCCAACATTTCTAATATGCAAATTTTAGCTTAA 2436 0.4048 MHVILPRNSEADVSSDVKGIIGAILDGSSRIGQEQAVAMKLTLEDFHHNSNQSFTLHVRDSKGDPLLAAIAAKDLIDNQKVQAIVGPQTWEETSLVADVCNQRSIPLLSLADTTPKWAIEKWQFLLQSSPSQVMQMKAIAEIVKSWNLYKVSIIYEDGDSSSAEVLPQLYEALTEVGTELSNVLAIPPFVSSSLSQELEKLRGGQCRVFIVHLSLPSALHLFETAKRTNMMEEGNVWISTSTFTNLVHSLNTSTISNLQGIIGVKSYIPNLWHQYANFYHRFRREFSSANFEEYNYEPGIFAAQAYDAAWTVLQAMRETKPKQGQLFLNKILLSNFTGLSGKIQFTDKKLSPARTFQIIDVIGRSYREIGFWSDGHSFSKSLDQNASYSSFVKEFGKMINPTCSKRLRIGVPSTSTFKQYVDVTQDHSEKVTSFEGFAIDLFEETVKKLPYHLEYEFFAFNGTYDDLVKQVYYKKYDAVVGDVAIVSSRYEYVSFTQPYTDPGVVMIVPVKPKTGNRAWLFMKPFTKLMWVLILVIIFYNGFVVWMIERNHCPELKGPILHQTTTMLWLAFFSLFSLNGDRLHSNLSRVAMVVWLFVALIITQTYTASLASMLTVERFEPTVDSIQVLKNSNAKVGYDRGSYLKRYIQDALGINAENIKQFNSSENYAEAFRNKEIAAAFLDIPEAKIFLAKHCKGFTRGPAYKVGGYGFVFPKGSPLIHGVNQALLNISENGTLRDLENSMLASEECKDVDPGAETTSLSPGSFMRTMWSLMTAVIKRWRSRKRLLSGRIHNVAENPLNSSNISNMQILA* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0145 811 Gene3D - 26 353 - -
Apr5g0145 811 Gene3D - 517 643 - -
Apr5g0145 811 Gene3D - 391 516 - -
Apr5g0145 811 CDD PBP1_GABAb_receptor_plant 21 382 IPR044440 -
Apr5g0145 811 Pfam Ligand-gated ion channel 741 755 IPR001320 GO:0015276|GO:0016020
Apr5g0145 811 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 766 - -
Apr5g0145 811 SUPERFAMILY Periplasmic binding protein-like II 404 740 - -
Apr5g0145 811 Gene3D - 692 750 - -
Apr5g0145 811 PIRSF IGluLR_plant 2 778 IPR017103 -
Apr5g0145 811 CDD GluR_Plant 405 743 - -
Apr5g0145 811 SUPERFAMILY Periplasmic binding protein-like I 20 374 IPR028082 -
Apr5g0145 811 SMART GluR_14 406 745 IPR001320 GO:0015276|GO:0016020
Apr5g0145 811 Pfam Bacterial extracellular solute-binding proteins, family 3 433 740 IPR001638 -
Apr5g0145 811 PANTHER GLUTAMATE RECEPTOR 14 766 - -
Apr5g0145 811 Gene3D - 131 374 - -
Apr5g0145 811 Pfam Receptor family ligand binding region 37 362 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0145 Apr-Chr5 1262871 1267513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0145 21 750 Ion Channels AT5G27100 32.304 3.42e-127 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0145 - - gmx:100818623 1255.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0433 2 5030817 5037950 Apr5g0145 5 1262871 1267513 ECH
Apr5g0145 5 1262871 1267513 Apr5g0145 5 1262871 1267513 ECH