Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0142 ATGGATCAAATGAGTGATTTGCAAATGGGACAGCAAAGTCGTAGTCATTCTCAGTCTGAAAGCATCCATGGCAGAGGCACCAACATTTCTCAGCCTAATATTAGTACAGTGGTGTCAGCTTCAGGGGATGCAATGAATGTAGATTCCCATTATTTACTAGATGCTCACGATAATGTCCCGATGCACGGAATAGTTCACCGTCAACATAATCGTCATATGGGTGCTGCCTATGTATATTGTCCTGACATGAATCCTCCATCTAGTACTGCTGTGTCTGGAAATCGCAGAACCTCCAATCAGTTGTCAGGTTCAAACACATTCACAGCTTCTGGGACATACAAACGCAAACATTCTGTAGGAACTAGAGGAAATAATCAACATTTAAATGCTTCAGCTAGTTCTTCGATTGGTCCTCGCAATGCAAGACATGCAGAAAATGGAATTCCTTTGCCATCATTTTCTAGTTCGTGGAGCAGATCAGATGAGCCTCTTATGGTGTATGACCATAACCATTCAATTCAAGGAAACTATTCAGGGCAGCACTTTCATCCAGCTCCTCTTCCAAGGTTGGCTCAACAATTGAATAGCAATAATAACAATGGTCATTCTTTGGCTTGGAATCAGTCTCTTCCAATGCCCTTTGTACAAGTTCCCAATGCTAATGGACGTTCGTTAGAGAATACAAATATGGGTTTGTGGAGATACCATGATACATCTGGCAGCACAAATGGCCTAAGATTTCCCTATCCTGCTCCGGTCAACCCGCATTACCATGCCTTTCATTATCATACGCGGCCTGTGCAAGGGAGGAGAGGTCACTCCATCAACTTTCATCCTCCAGTAACTGCAGCTTCATATAGAGTTCCAACAAATCCTTTAAGCAGTGCTCAAATTCCCATACAAAATGCTTTTGAGATGGGCTCTAGGCGTGGTCTCCCGGTGCCACCTGCAGGTGCATGGATACACCGACCTCATAGGATGACTGTTAGATGTCCAACTCTTCCTCCCATGGCCTTTCTCCAAGTTGAGAATATTGCTATACTGGTTGGCCATCATAGAGATATGCGCTTGGACATTGAGCACATGTCTTATGAGGAGCTTCTTGCATTAGGTGAGCGAATTGGCAATGCAAACCCAAGTTTATCAGAGGAAACAATTACAAATCAAATGGAGACAAGAACTTATTTACTACCTACTAACTTAGAGGAGGCAAATTCTGATGAACAAGAAGCTGATATTTGCATAATATGCCAGGATGAATATAAGAACCAAGATAAGATTGGAATTCTTCGATGTGAGCACGAATATCATGCAGATTGTTTAAGGAATTGGTTGCTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCATGA 1386 0.425 MDQMSDLQMGQQSRSHSQSESIHGRGTNISQPNISTVVSASGDAMNVDSHYLLDAHDNVPMHGIVHRQHNRHMGAAYVYCPDMNPPSSTAVSGNRRTSNQLSGSNTFTASGTYKRKHSVGTRGNNQHLNASASSSIGPRNARHAENGIPLPSFSSSWSRSDEPLMVYDHNHSIQGNYSGQHFHPAPLPRLAQQLNSNNNNGHSLAWNQSLPMPFVQVPNANGRSLENTNMGLWRYHDTSGSTNGLRFPYPAPVNPHYHAFHYHTRPVQGRRGHSINFHPPVTAASYRVPTNPLSSAQIPIQNAFEMGSRRGLPVPPAGAWIHRPHRMTVRCPTLPPMAFLQVENIAILVGHHRDMRLDIEHMSYEELLALGERIGNANPSLSEETITNQMETRTYLLPTNLEEANSDEQEADICIICQDEYKNQDKIGILRCEHEYHADCLRNWLLVKNVCPICKSEALTP* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0142 461 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 109 460 - -
Apr5g0142 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 459 IPR013083 -
Apr5g0142 461 MobiDBLite consensus disorder prediction 1 33 - -
Apr5g0142 461 MobiDBLite consensus disorder prediction 88 140 - -
Apr5g0142 461 Pfam Ring finger domain 413 455 IPR001841 -
Apr5g0142 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 109 460 IPR045191 GO:0061630
Apr5g0142 461 MobiDBLite consensus disorder prediction 88 154 - -
Apr5g0142 461 ProSiteProfiles Zinc finger RING-type profile. 414 455 IPR001841 -
Apr5g0142 461 SUPERFAMILY RING/U-box 407 459 - -
Apr5g0142 461 SMART ring_2 414 454 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0142 Apr-Chr5 1247939 1252026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0142 352 459 C3H Transcription Factor Family AT2G15530 50.909 2.47e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0142 K19041 - gmx:100779069 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0142 5 1247939 1252026 Apr5g0142 5 1247939 1252026 ECH