Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0138 ATGGAGGATTTCATCTTCTCCTTCAAGACCCAAGAACATGCACACCACAGAGCAAAACACAACAAGAAGAGGCTAACTGAAGACCAAGTGGCCATCCTAGAGAATTGCTTTGCCTCTAACAAGAAGCTTGAACCTGAGCAAAAGTTCCAACTTGCAAACCAACTTGGTGTCCCTCCAAGAAAGGTTGCCATTTGGTACCAAAACAAGAGAGCTAGGTGGAAGAATCAAACCCTGGAGGTTGATCATGGTGTTCTTCAGGCAAAGCTAGAGAATGTGATGGCTGAAAAAGAGAAACTAGAGAAAGATGTTGAAAGGCTGAAAGAAGAGCTGAAGAAAGCTCAAGAGATGCTACTTAGTAGCAATAGCAACATCAAAGGTGGAGACCATAATAATGCTTCTTGTGAATTTTCAACTTCTTTTGAGGAGGGTGGGAATTCAGGGGTGCATGATGATGCTACTCATGAGTTTTGGCACAATGCTGAGGTTATGCAGGATGAGGAGCTTTATGCTTACTTCATGGGTGCAAATTATGGGTCAAGCTTGCATGAGAAAACGGCATAA 561 0.4296 MEDFIFSFKTQEHAHHRAKHNKKRLTEDQVAILENCFASNKKLEPEQKFQLANQLGVPPRKVAIWYQNKRARWKNQTLEVDHGVLQAKLENVMAEKEKLEKDVERLKEELKKAQEMLLSSNSNIKGGDHNNASCEFSTSFEEGGNSGVHDDATHEFWHNAEVMQDEELYAYFMGANYGSSLHEKTA* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0138 186 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 180 IPR045224 GO:0003700
Apr5g0138 186 CDD homeodomain 19 76 IPR001356 GO:0003677
Apr5g0138 186 Gene3D - 13 81 - -
Apr5g0138 186 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Apr5g0138 186 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 10 180 - -
Apr5g0138 186 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Apr5g0138 186 Coils Coil 82 123 - -
Apr5g0138 186 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Apr5g0138 186 SMART HOX_1 18 80 IPR001356 GO:0003677
Apr5g0138 186 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0138 Apr-Chr5 1226637 1227197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0138 12 180 Homeobox Transcription Factor Family AT5G53980 44.706 2.51e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Apr5g0138 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0138 - - gsj:114378167 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0138 5 1226637 1227197 Apr5g0138 5 1226637 1227197 ECH