Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0136 ATGGATACCTACTACCACCACTTTGACAACAACACTGAACCACACTTACCACCTGGCTTTCGATTCCACCCGACAGATGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAACACCTTCACTGGCAGAGCCATAGTTGAAGTTGACCTTAACAAATGCGAACCATGGGAACTTCCTGAGAAAGCTAAGATGGGTGAGAAGGAGTGGTACTTCTTTAGCCTACGTGATAGAAAGTACCCAACTGGGTTACGTACTAATAGGGCCACAGAAGCTGGTTATTGGAAAGCCACAGGGAAAGATAGAGAGATCTATAGCTCCAAAACTTGTTCCTTAGTTGGCATGAAGAAAACCTTGGTTTTCTATAGAGGTAGAGCCCCCAAGGGTGAAAAGAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCATTACCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATATCACGCGTGTTTCAGAAGAACACCACAGGGGGTGGCTCCACCGTCTCTGCTGCCACCACAGCCATGGCCACCACCGCCAATTCAAAGAAAACAAAAATGAGCACATCAAATGCTAGTTGCAGCATGAGTCTTTGCCCTGAACCCGCTTCACCCTCATCTTCCATATACCTTCCACCGCTTCTAGAAGCTTCTCCTTACACAACATTCAACGACCGAGAAAGCTGCTCCTTCGACAGCGCCACCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCGCCGATGCTGCCACCCTCGACCACCTCGTTCCCACGCCGGAGCCACCGCTTTGTCAAGACCCTTTCTCTCGGTTCCAGAGGAACAACGTTGGTGTCCCTGTCTTCCCAAGCTTGAGGTCGTTACAAGACAACCTTCAGCTACCGTTTTTTTTCTCCCCGGCGGTGCACGGCGGAGCTGCTGACGTGGCGGGATGTGGCGGCATCGGGAACTGGCCAGTGACGGAGGAGCAGAGGGTGGCTGACGGCGGTTCGGGCATGATGGGAGCGTCGGAACTGGATTGCATGTGGGGCTATTGA 1065 0.5146 MDTYYHHFDNNTEPHLPPGFRFHPTDEELITYYLLKKVLDNTFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNTTGGGSTVSAATTAMATTANSKKTKMSTSNASCSMSLCPEPASPSSSIYLPPLLEASPYTTFNDRESCSFDSATNQREHVSCFSTISADAATLDHLVPTPEPPLCQDPFSRFQRNNVGVPVFPSLRSLQDNLQLPFFFSPAVHGGAADVAGCGGIGNWPVTEEQRVADGGSGMMGASELDCMWGY* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0136 354 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Apr5g0136 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 351 - -
Apr5g0136 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 10 351 - -
Apr5g0136 354 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Apr5g0136 354 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Apr5g0136 354 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0136 Apr-Chr5 1205957 1207999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0136 1 354 NAC Transcription Factor Family AT5G53950 53.728 1.16e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr5g0136 NAM 3.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0136 - - gmx:100788671 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0136 5 1205957 1207999 Apr5g0136 5 1205957 1207999 ECH