Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0124 ATGGAGGCCAAGAGTGTTGAGAGGAAGAGGACATTGGTTGAGAAGGTAAGAAAGAGTAATATCACAGTTGAAGAAGAAGTGGAGAATGAAGTGGAAGAGGAGGATGAAAGTGGTGGTGGTGGTGATGTTAATTTCATAGAAGAAGAGAAGAAAAAGGGGGTTAGTGGGAGTGGGAGAAGAGGGGCTAGTGGTAGTGGTGGTGGTGGTGGAGTTTCTCCACCTTCATGTCAAGCTGAAAGGTGTGGTGCTGATTTGACTGATGCAAAGAGATACCATCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGTTGAGGCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAGTTTGATGAAGCAAAGAGAAGCTGCCGTCGGCGCCTGGCCGGACACAATGAACGGCGGCGGAAGAGCAACCCGGAAGCTACTAATGAGGGCTGCAACAAAGGCCATCATCAACCAAAGGAAACAACACAGTGTAGGCTTGCTGATGAGAGGGGGAGAATTCAGATGAACCTACCAGGGAGTTCTGGCTATAAGTCTTTCAATATCAGATGA 594 0.4882 MEAKSVERKRTLVEKVRKSNITVEEEVENEVEEEDESGGGGDVNFIEEEKKKGVSGSGRRGASGSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNPEATNEGCNKGHHQPKETTQCRLADERGRIQMNLPGSSGYKSFNIR* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0124 197 Coils Coil 13 33 - -
Apr5g0124 197 MobiDBLite consensus disorder prediction 1 25 - -
Apr5g0124 197 MobiDBLite consensus disorder prediction 141 170 - -
Apr5g0124 197 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 180 - -
Apr5g0124 197 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 180 IPR044817 GO:0003677
Apr5g0124 197 MobiDBLite consensus disorder prediction 1 77 - -
Apr5g0124 197 MobiDBLite consensus disorder prediction 26 42 - -
Apr5g0124 197 Pfam SBP domain 76 149 IPR004333 GO:0003677
Apr5g0124 197 SUPERFAMILY SBT domain 74 154 IPR036893 GO:0003677|GO:0005634
Apr5g0124 197 ProSiteProfiles Zinc finger SBP-type profile. 73 150 IPR004333 GO:0003677
Apr5g0124 197 MobiDBLite consensus disorder prediction 146 170 - -
Apr5g0124 197 Gene3D - 67 137 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0124 Apr-Chr5 1118038 1119433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0124 60 155 SBP-box Gene Family AT1G53160 70.833 6.17e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr5g0124 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0124 - - aprc:113864686 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0412 2 4843679 4844994 Apr5g0124 5 1118038 1119433 ECH
Apr2g1904 2 24539727 24541372 Apr5g0124 5 1118038 1119433 ECH
Apr5g0124 5 1118038 1119433 Apr1g1438 1 23709663 23711589 ECH
Apr5g0124 5 1118038 1119433 Apr3g1782 3 33650360 33652550 ECH
Apr5g0124 5 1118038 1119433 Apr5g0124 5 1118038 1119433 ECH