Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0122 ATGGTGCCGCAAAGATGTTACCTTATGATTTTTATGCAATGGGGTTTGTTGGCTTGTTTTCCTTGTTTTTCTATGGGACTTGAAACCCCAGCCTCGTCATGCGACAAAAATGATTTATTGGCCCTGAAGGAATTTGCGAGCAACCTGACAAAAGGGTCCATTATTACAGCATGGTCAGATGATGTTTTCTGCTGCAAATGGGTTGGAGTTGAATGTGATAATGTGGATGATGGAGCAGCTGCTAGGAGAGTGTCCAGGTTGGTTCTCCAAGGAATGGATCTCAATGGCACAATTTCCAGCTCTTTAGGTCTTCTAGATAAGCTAAAAGTGCTGGATCTTTCATTCAATCATCTCCAAGGTGAATTGCCTTCTGAATTATCTAGATTGAAGCAGTTAAAGGTTCTTGACTTCAGCCATAATATGCTGTCTGGACCAGTTGTTGGGGCACTTTCTGGTTTGCAATCCATTCAGATACTGAATATTTCTAGCAATTTTTTTGTTGGAGAACTATTCCATTTTGGGGGATTTCAAGATCTCCTTGCTCTCAACATAAGCAACAATTCATTCACTGGTCAGTTCAGTTCTCAATTTTGCAGCTTTTCCAAGGTTCTTCTTATTCTTGATATATCCAAAAATCATTTTGCTGGTGGTCTTGAATGGTTGGACAATTGTAGCACATCTATCCAAGAATTTCATTTGGATTCCAATTTGTTTTCTGGCCCTCTTCCTGATTCCTTGTATTCAATGTCAGCCTTGGAGCAGCTCTCAGTCTCTGTGAATAACTTCTCTGGTCAGTTAAGCAAGGATTTGAGAAATCTATCAGGCCTAAAATCTCTGATGCTTTCTGGAAATCAGTTTTCAGGGGAAATCCCAAATGTATTTGGTAATCTTTTGCATCTGGAACAATTAGAAGGACACTCCAATTCATTTTCTGGACCATTGCCGTCAACCTTGGCCTTATGCTCAAAACTTCGTGTGCTTGATCTTCGAAATAATTCTTTGACAGGTTCTGTTGGCCTTAATTTCATTGGGTTGCCTAATCTTGTCACATTGGACCTTGGTAGCAATCATTTTAATGGATCCCTTCCAAATTCTTTGTCCCATTGCCATGAATTGACACTGTTAAGCCTTGCTAAGAATGAATTAACTGGTCAAATCCCTGAGAGTTACATAAATCTCACTTCACTTTTAATTCTGTCTTTGTCAAACAACAGCTTTGAGAACTTATCTGGGGCTCTGTATGTACTGCAGCAATGTAAAAATCTAACCACTGTTATCCTTGCAAAGAATTTCCATGGTGAGGAATTTCCACAAAGTTTAACCACAGGCTTCAAGAGCCTTACGGTTTTAGCACTTGGAAATTGTGGTCTCAAAGGCCGTATTCCTGATTGGCTATTAAATTGTGCAAAATTGCAAGTTCTTGATTTGTCATGGAACCATTTTGAAGGTAGCATTCCTTCTTGGATTGGTCAAATGGACAATTTGTTTTACTTGGATTTGTCAAATAATTCTCTTACAGGAGAGATACCAAAAGGTTTGACAGAGTTGAGGGGCCTCATGTCCCCTAATTACCTCACATCAAGTTTCTTTGCATCTACTACTATTCCTCTCTATGTTAAGAGAAACAAGAGTGCCAATGGGCTGCAGTATAACCATGCCTCAAGTTTCCCTCCTTCAATATACTTGAGCAATAACAGATTAAGAGGAAAAATATGGCCTGAAATTGGTCATCTAAAAGCACTTCATATCTTGGATTTAAGCAGGAACAACATCACTGGCACCATTCCTAGCTCTATTTCAGAGATGAAGAATTTGGAGACACTAGATTTATCTAATAATGATCTCTTTGGAACTATCCCTCCATCATTTAATAGTCTCACATTCTTATCAAAGTTTAGTGTGGCATATAACCACTTGCAGGGACCTATTCCAACTGGGGGACAATTTTCAAGTTTCCCTAATTCGAGTTTCGAGGGCAACCTGGGGCTTTGTGGGGAAATAGATCATCCTTGTAGCAGTGAAGAAAATGTGGGCTTGGTGCCCAACATTGCTACTACTGATTCTGTGGGAAAATTTGGTAAAAGCACTGTTCTTGGCATAACACTTGGTTTAGGTGTAGGCCTTGCACTGCTTCTTGCTATTGTTCTGCTGAGAATGTCAAAGAGGGATGATGATATGCCAATTGATAACTTTGATATGGAGCTTAGCAGGCCAAACAGGATACCTGAAGCGCTTGTTTCTTCAAAATTGGTGCTGTTTCAGAATTCAGATTGTGAGGATCTCACAGTTGCAGATTTGTTAAAATCCACAAACAATTTTAACCAAGCAAATATAATTGGTTGTGGCGGGTTTGGTCTTGTCTACAAGGCAAATCTTGCAAATGGCACAAGGGTAGCTATCAAGAAACTTTCAGGGTACTGTGGTCAAGTGGAACGTGAATTCCAAGCTGAAGTAGAAGCCCTCTCAAAAGCTCAGCACAGAAACCTTGTTTCTCTTAAAGGTTATTGTCAGCATGTCCATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGGAGCCTCGATAATTGGCTGCATGAGAGTGAGGATGGAAAATCAGCTCTAAAATGGGATGTAAGACTCAAGATTGCCCAAGGTGCAGCTCATGGATTAGCTTACTTGCACAAGGAGTGTGAACCGCATATTGTGCATCGAGATATTAAATCTAGCAACATACTTTTAGATGATAAATTTGAAGCTTATTTGGCTGACTTTGGTCTCTCGAGGCTACTTCAACCATATGATACTCATGTTACTACTGATTTAGTAGGAACTTTAGGATACATTCCTCCAGAGTATAGCCAGGCACTGAAAGCAACTTTCAAGGGTGATATTTATAGTTTTGGTGTTGTTCTTATTGAGCTTCTTACTGGTAGAAGGCCTGTAGAAGTCATCATTGGGCAATGTTGCAGGAATCTCGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAGGGAGCAGGAAATTTTTGATTCAGCCATTTGGCACAAAGATAATGAGAAACAGCTCTTAGAGGTATTAGCTATTGCTTGTAAATGTGTTGATGAAGATCCAAGGCAGAGACCCCATATTGAGTTAGTTGTTTCATGGCTTGATAGTGTAGGATTTGATGGCTCTCAACATTCATTTTAA 3171 0.3977 MVPQRCYLMIFMQWGLLACFPCFSMGLETPASSCDKNDLLALKEFASNLTKGSIITAWSDDVFCCKWVGVECDNVDDGAAARRVSRLVLQGMDLNGTISSSLGLLDKLKVLDLSFNHLQGELPSELSRLKQLKVLDFSHNMLSGPVVGALSGLQSIQILNISSNFFVGELFHFGGFQDLLALNISNNSFTGQFSSQFCSFSKVLLILDISKNHFAGGLEWLDNCSTSIQEFHLDSNLFSGPLPDSLYSMSALEQLSVSVNNFSGQLSKDLRNLSGLKSLMLSGNQFSGEIPNVFGNLLHLEQLEGHSNSFSGPLPSTLALCSKLRVLDLRNNSLTGSVGLNFIGLPNLVTLDLGSNHFNGSLPNSLSHCHELTLLSLAKNELTGQIPESYINLTSLLILSLSNNSFENLSGALYVLQQCKNLTTVILAKNFHGEEFPQSLTTGFKSLTVLALGNCGLKGRIPDWLLNCAKLQVLDLSWNHFEGSIPSWIGQMDNLFYLDLSNNSLTGEIPKGLTELRGLMSPNYLTSSFFASTTIPLYVKRNKSANGLQYNHASSFPPSIYLSNNRLRGKIWPEIGHLKALHILDLSRNNITGTIPSSISEMKNLETLDLSNNDLFGTIPPSFNSLTFLSKFSVAYNHLQGPIPTGGQFSSFPNSSFEGNLGLCGEIDHPCSSEENVGLVPNIATTDSVGKFGKSTVLGITLGLGVGLALLLAIVLLRMSKRDDDMPIDNFDMELSRPNRIPEALVSSKLVLFQNSDCEDLTVADLLKSTNNFNQANIIGCGGFGLVYKANLANGTRVAIKKLSGYCGQVEREFQAEVEALSKAQHRNLVSLKGYCQHVHDRLLIYSYLENGSLDNWLHESEDGKSALKWDVRLKIAQGAAHGLAYLHKECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLIELLTGRRPVEVIIGQCCRNLVSWVFQMKSENREQEIFDSAIWHKDNEKQLLEVLAIACKCVDEDPRQRPHIELVVSWLDSVGFDGSQHSF* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0122 1056 ProSiteProfiles Protein kinase domain profile. 773 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0122 1056 SUPERFAMILY L domain-like 51 303 - -
Apr5g0122 1056 Pfam Leucine Rich Repeat 470 489 IPR001611 GO:0005515
Apr5g0122 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Apr5g0122 1056 SMART serkin_6 773 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0122 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 442 516 - -
Apr5g0122 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 173 282 - -
Apr5g0122 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 615 1048 - -
Apr5g0122 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 561 616 - -
Apr5g0122 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 164 - -
Apr5g0122 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 282 437 - -
Apr5g0122 1056 SUPERFAMILY Protein kinase-like (PK-like) 758 1044 IPR011009 -
Apr5g0122 1056 SMART LRR_typ_2 105 129 IPR003591 -
Apr5g0122 1056 SMART LRR_typ_2 345 369 IPR003591 -
Apr5g0122 1056 SMART LRR_typ_2 492 516 IPR003591 -
Apr5g0122 1056 SMART LRR_typ_2 578 601 IPR003591 -
Apr5g0122 1056 SMART LRR_typ_2 393 416 IPR003591 -
Apr5g0122 1056 SMART LRR_typ_2 602 625 IPR003591 -
Apr5g0122 1056 SMART LRR_typ_2 273 296 IPR003591 -
Apr5g0122 1056 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Apr5g0122 1056 Pfam Leucine rich repeat 560 615 IPR001611 GO:0005515
Apr5g0122 1056 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Apr5g0122 1056 Pfam Leucine rich repeat 107 164 IPR001611 GO:0005515
Apr5g0122 1056 Gene3D Ribonuclease Inhibitor 303 370 IPR032675 -
Apr5g0122 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 173 282 - -
Apr5g0122 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 442 516 - -
Apr5g0122 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 561 616 - -
Apr5g0122 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 282 437 - -
Apr5g0122 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 615 1048 - -
Apr5g0122 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 164 - -
Apr5g0122 1056 SUPERFAMILY RNI-like 226 516 - -
Apr5g0122 1056 Gene3D Transferase(Phosphotransferase) domain 1 849 1049 - -
Apr5g0122 1056 PRINTS Leucine-rich repeat signature 495 508 - -
Apr5g0122 1056 PRINTS Leucine-rich repeat signature 602 615 - -
Apr5g0122 1056 Gene3D Phosphorylase Kinase; domain 1 739 848 - -
Apr5g0122 1056 Gene3D Ribonuclease Inhibitor 371 675 IPR032675 -
Apr5g0122 1056 ProSitePatterns Protein kinases ATP-binding region signature. 779 802 IPR017441 GO:0005524
Apr5g0122 1056 SMART LRR_sd22_2 105 128 - -
Apr5g0122 1056 SMART LRR_sd22_2 578 601 - -
Apr5g0122 1056 SMART LRR_sd22_2 393 411 - -
Apr5g0122 1056 SMART LRR_sd22_2 492 515 - -
Apr5g0122 1056 SMART LRR_sd22_2 602 628 - -
Apr5g0122 1056 SMART LRR_sd22_2 321 342 - -
Apr5g0122 1056 SMART LRR_sd22_2 129 155 - -
Apr5g0122 1056 Pfam Protein kinase domain 774 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0122 1056 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Apr5g0122 1056 ProSiteProfiles Leucine-rich repeat profile. 604 626 IPR001611 GO:0005515
Apr5g0122 1056 SUPERFAMILY L domain-like 444 663 - -
Apr5g0122 1056 Gene3D Ribonuclease Inhibitor 33 302 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0122 Apr-Chr5 1082984 1087179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0122 39 1037 Receptor kinase-like Gene Family AT1G55610 33.937 2.38e-161 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Apr5g0122 Pkinase 3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0122 - - gmx:100789534 1712.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0122 5 1082984 1087179 Apr5g0122 5 1082984 1087179 ECH