Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0112 ATGGGTTGCGTCTGTTGCAAGCCCTCTGCCATTGAGGATAGCAAAGAGAGTCCAAGAGAGCGTTTGTCAAGCAAGGTTTCGTTGGACCCTTGCGTATCGAGGGGTACTTCGTCGAGGAGGGAGGAAGCATACAGGGTGAAGGATAGATATGATGGTAATGATGTGAGAATTGCCTTGATTGATAAGCAAGGGAACGGTTCTGTGCGGTTGCAAAGTGATAATAATGTTGAAAGGAAGAAGGAGAAAATGGAATATGCTGCTGCTCAACCACATCCAGGAGTTGGTAGTGTTCCCAAAGCTATGGAAGGAGAGCAGGTTGCAGCTGGGTGGCCCTCTTGGCTGGCAGCAGTGGCTGGAGAAGCTATCAAGGGATGGTTGCCTCGCCGTGCCGATTCTTTTGAGAAGTTGGATAAGATTGGACAGGGAACTTATAGTAATGTTTATAGAGCTCGTGATCTTGAGCAAAAGAAAATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCAGAGAGTGTTCGCTTTATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGCCTGGTTACATCTAGGATGTCTTGCAGCTTATACCTTGTTTTTGAATACATGGAGCATGACTTGGCCGGGCTTGCATCACATCCTGGGTTGAAGTTTACCGAAGCACAGGTTAAATGTTACATGCAGCAGCTTTTACGAGGACTTGATCATTGCCACAGCTGTGGTGTGCTGCATCGCGATATCAAGGGATCCAACCTTTTGATTGACAACAATGGAATCTTAAAGATTGCTGACTTTGGTTTGGCAAGTGTTTTTGATCCCAATCAAACTCAGCCTTTGACAAGCCGAGTTGTCACCCTTTGGTACCGGCCACCAGAGCTTTTACTTGGAGCTACATATTATGGCCCTGCTGTAGATTTATGGAGTACAGGCTGTATTCTTGCCGAGCTGTATGCTGGCAAACCTATAATGCCTGGAAGAACCGAGGTGGAGCAGTTACATAAAATTTTCAAACTTTGTGGTTCACCTTCTGAGGAATATTGGAGAAAATCAAGGTTGCCCCATGCAACAATATTTAAGCCCCAACAACCCTATAGGCGTTGTGTTGTTGACACATTCAAGGACTTTCCTGCTCCTGCCTTAGCACTCATGGAGACCCTTTTGTCCATAGATCCTGCTGATCGTGGTACTGCAGCATCTGCTTTGGAGAGTGAGTTCTTCATGACAAAGCCTCTACCTTGTGATCCTTCAAGTTTGCCAAAGTACCCTCCTAGCAAAGAATTTGATGCCAAAGTACGAGATGAACAAGCAAGAAGGTGGGCAGCAGGTAGCAAGGGCCAGAGACACGACCCTGAAAGAAGAGGGGCAAGAGAATCTCGAGCAGTCCCTGCACCTGATGCTAATGCTGAACTGCCCATGTCAATGCAGAAGAGACATGGTCAGGCTAATTCTAAAAGCAGAAGTGAGAAGTTTAATCCTCATCTCGAAGAAGCTTCTGGATTTCCCATTGATCCCCCTAGACAGTCACAAGCTGTAGAAGTAGGCATAGAAAATCAGGTACAGCAACATAAAAGATCCTCCCATTCTGGTCCACTGGCTCACCGCACTGCATGGGCTAAAGCTGGGAAGAACCAGGATGATGCTCCGAAGATTTCAGTTGGGGGTGATCTATCAACATTCTCAGGCTTAGTTGCAACCAAGAGTATGTTGGCAGATGATCGCAGAGAAAGGGCTGGATCATCACAAATGGAGGCTTCAAAATTAATAGGCAGGTTCCCAGGATCATTTAAGGATGTCTCTGAATCATCAATGCAACAAGATCAAAGACATCATGTACAGGGTGTAGTAGGTGCTTCTCAAAAGGAAGAAGGGAGAGGCAGCAACAAAGACCCAGTTCTTGTTGGATATGGGTCAAAGGGTCATAAAATTCATTATTCTGGTCCATTGCTGGTTCCATCAAGCAACACAGATCAGATGTTGAAAGACCACGACCGCCAAATTCAAGAAGCCGTGAGACGAGCACGTTTGGATAAGGCAAAAATGAGAAGACTTCAAGCAGAAGGGAACCAGATCACCAATTCATTATTTGTTTCTGGTCGTTGA 2133 0.4552 MGCVCCKPSAIEDSKESPRERLSSKVSLDPCVSRGTSSRREEAYRVKDRYDGNDVRIALIDKQGNGSVRLQSDNNVERKKEKMEYAAAQPHPGVGSVPKAMEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASVFDPNQTQPLTSRVVTLWYRPPELLLGATYYGPAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKSRLPHATIFKPQQPYRRCVVDTFKDFPAPALALMETLLSIDPADRGTAASALESEFFMTKPLPCDPSSLPKYPPSKEFDAKVRDEQARRWAAGSKGQRHDPERRGARESRAVPAPDANAELPMSMQKRHGQANSKSRSEKFNPHLEEASGFPIDPPRQSQAVEVGIENQVQQHKRSSHSGPLAHRTAWAKAGKNQDDAPKISVGGDLSTFSGLVATKSMLADDRRERAGSSQMEASKLIGRFPGSFKDVSESSMQQDQRHHVQGVVGASQKEEGRGSNKDPVLVGYGSKGHKIHYSGPLLVPSSNTDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQITNSLFVSGR* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0112 710 CDD STKc_CDK9_like 133 417 - -
Apr5g0112 710 PANTHER CYCLIN-DEPENDENT KINASE 1 692 - -
Apr5g0112 710 MobiDBLite consensus disorder prediction 1 40 - -
Apr5g0112 710 Gene3D Phosphorylase Kinase; domain 1 120 215 - -
Apr5g0112 710 MobiDBLite consensus disorder prediction 447 470 - -
Apr5g0112 710 Gene3D Transferase(Phosphotransferase) domain 1 216 455 - -
Apr5g0112 710 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Apr5g0112 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Apr5g0112 710 MobiDBLite consensus disorder prediction 615 639 - -
Apr5g0112 710 SMART serkin_6 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0112 710 SUPERFAMILY Protein kinase-like (PK-like) 127 425 IPR011009 -
Apr5g0112 710 PANTHER CELL DIVISION PROTEIN KINASE 1 692 - -
Apr5g0112 710 ProSiteProfiles Protein kinase domain profile. 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0112 710 Pfam Protein kinase domain 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0112 710 Coils Coil 677 697 - -
Apr5g0112 710 MobiDBLite consensus disorder prediction 447 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0112 Apr-Chr5 979845 987304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0112 125 458 Core Cell Cycle Gene Families AT5G10270 53.714 1.10e-121 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr5g0112 Pkinase 7.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0112 - - gmx:100798022 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0112 5 979845 987304 Apr5g0112 5 979845 987304 ECH