Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0103 ATGGACTCTTCATACTTTGACTCTAATGGGGGAGTCTCACTAAAGCAAAAACTGAAATCGGCTTCAGTGGAGACAAAAATCCCTACTAGTGACAATGGTTGCTTTGAATGCAATATTTGTTTGGAATCGGCACATGACCCTGTGGTCACTTTCTGTGGTCACCTTTACTGTTGGCCATGCATATATAAATGGCTTGATGTCCAAAGCTCTTCTGATGAATCAGATCAGAATCAGACATGCCCGGTTTGTAAATCTGAGATATCTCATGCTTCATTAGTCCCCCTTTATGGCCGCGGAACATCTAATTCAGAATCTGAATCCAAGAAAATCCAGAAGAGTCTGGGAATACCTCACAGGCCACCTCCTTACAACTTGAATGCAGTGTTAACTTCTACTCGTCCGCGGCTGCGGCAGCCGCATCCCGGGCAGCAACTCCATCCAAGTTATTTCCAGGCACAATCACGGCCATTTCATTATGAACACTACATTCCTCACCTTTATGGAAGTTATGGTACCAATGGATTACCTTATCTTGGAGGTGCAGCTATGACTAGTTTCTTTAACCCTGTGATTGGTATGTTTGGGGAGATGGTCTTGACAAGAATTTTTGGAGTCTCACAGGCAAATTTGTTTGCTTACCCTCATAATGGAAGTGGCAGTCCTAGAATGAGAAGGCAAGAAATGCAGATTGACAAGTCTCTGAACAGAGTTTCTATCTTTCTTCTTTGTTGTATCCTTTTGTGTCTTCTCTTATTTTGA 759 0.4269 MDSSYFDSNGGVSLKQKLKSASVETKIPTSDNGCFECNICLESAHDPVVTFCGHLYCWPCIYKWLDVQSSSDESDQNQTCPVCKSEISHASLVPLYGRGTSNSESESKKIQKSLGIPHRPPPYNLNAVLTSTRPRLRQPHPGQQLHPSYFQAQSRPFHYEHYIPHLYGSYGTNGLPYLGGAAMTSFFNPVIGMFGEMVLTRIFGVSQANLFAYPHNGSGSPRMRRQEMQIDKSLNRVSIFLLCCILLCLLLF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0103 252 SMART ring_2 37 83 IPR001841 -
Apr5g0103 252 Pfam RING-type zinc-finger 37 81 IPR027370 -
Apr5g0103 252 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Apr5g0103 252 SUPERFAMILY RING/U-box 34 96 - -
Apr5g0103 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 138 IPR013083 -
Apr5g0103 252 CDD RING-HC_AtRMA_like 35 85 - -
Apr5g0103 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 4 252 - -
Apr5g0103 252 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Apr5g0103 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 252 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0103 Apr-Chr5 926983 929211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0103 9 238 C3H Transcription Factor Family AT4G27470 47.234 2.23e-55 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0103 K10666 - gmx:100817526 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0103 5 926983 929211 Apr5g0103 5 926983 929211 ECH