Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0101 ATGCTTTTCAGAGACGGTGAGGTTTGTGGTGCTTGCTACCAAGTGATGTGTGATTACAGGGTCGACCCAAAATGGTGCCTCATTCGGCGCAGTGTGACAATAACTGCTACTAACTTTTGCCCTCCAAACAACCATGGTGGATGGTGTGACCCTCCATACCATCACTTTGACATGTCCATGCCTGCTTTTTTACGCATTGCACGACAAGGCAATGAAGGCATTGTTCCTGTCCTTTATAGAAGGGTGGCATGCAAAAGAAGAGGGGGAGTGAGGTTCACATTGAAGGGGCAATCCAATTTCAACATGGTGATGATATCAAACGTTGGTGGTAGTGGGGATGTTAAGGCTGTGTGGATCAGAGGATCCAGAAATGGAGTATGGTTGCCAATGCATAGGAATTGGGGTGCTAACTGGCAAAGCAGCGCAGATCTTAGAAACCAAAGACTCTCATTCAAAATGACTTTGGTTGATGGTAAGACATTGGTGTTTCTCAGTGTGGTGCCTTCAACTTGGAGATTTGGACAAACTTTTTCGTCACACAATCAGTTCTTTTAG 555 0.4541 MLFRDGEVCGACYQVMCDYRVDPKWCLIRRSVTITATNFCPPNNHGGWCDPPYHHFDMSMPAFLRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMISNVGGSGDVKAVWIRGSRNGVWLPMHRNWGANWQSSADLRNQRLSFKMTLVDGKTLVFLSVVPSTWRFGQTFSSHNQFF* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0101 184 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 89 IPR007112 -
Apr5g0101 184 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 99 179 IPR007117 -
Apr5g0101 184 SUPERFAMILY PHL pollen allergen 86 179 IPR036749 -
Apr5g0101 184 SMART dpbb_1 2 79 IPR007112 -
Apr5g0101 184 Pfam Lytic transglycolase 2 79 IPR009009 -
Apr5g0101 184 PANTHER EXPANSIN-A15 1 183 IPR002963 GO:0009664
Apr5g0101 184 Gene3D - 89 184 IPR036749 -
Apr5g0101 184 PRINTS Expansin signature 19 30 IPR002963 GO:0009664
Apr5g0101 184 PRINTS Expansin signature 32 42 IPR002963 GO:0009664
Apr5g0101 184 PRINTS Expansin signature 46 63 IPR002963 GO:0009664
Apr5g0101 184 PRINTS Expansin signature 88 100 IPR002963 GO:0009664
Apr5g0101 184 PRINTS Expansin signature 100 121 IPR002963 GO:0009664
Apr5g0101 184 PRINTS Expansin signature 136 157 IPR002963 GO:0009664
Apr5g0101 184 PRINTS Expansin signature 165 181 IPR002963 GO:0009664
Apr5g0101 184 PANTHER EXPANSIN-A12 1 183 - -
Apr5g0101 184 PRINTS Expansin/Lol pI family signature 72 88 IPR007118 GO:0005576
Apr5g0101 184 PRINTS Expansin/Lol pI family signature 127 141 IPR007118 GO:0005576
Apr5g0101 184 PRINTS Expansin/Lol pI family signature 165 179 IPR007118 GO:0005576
Apr5g0101 184 Gene3D - 1 85 IPR036908 -
Apr5g0101 184 Pfam Expansin C-terminal domain 90 168 IPR007117 -
Apr5g0101 184 SUPERFAMILY Barwin-like endoglucanases 2 107 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0101 Apr-Chr5 910713 912841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0101 2 184 Expansin Gene Family AT3G15370 71.585 3.84e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0101 - - aprc:113865634 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0101 5 910713 912841 Apr5g0101 5 910713 912841 ECH