Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0090 ATGGGAGTTCCAGAGAGAGACCCACTTTCACAATTGAGTTTACCTCCTGGGTTTAGATTTTACCCCACCGATGAGGAGCTTTTGGTTCAGTACCTTTGCCGCAAGGTTGCTGGGCACCATTTTTCTCTACCAATTATTGCTGAAGTTGACCTGTACAAGTTCGATCCATGGGTTCTTCCAGGCAAGGCGGTTTTTGGGGAGAAAGAGTGGTACTTTTTCAGCCCAAGAGATAGAAAGTACCCAAATGGATCACGGCCTAATAGAGTTGCAGGCTCAGGGTATTGGAAAGCCACCGGAACTGACAAAATCATCACCACCGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACATTGGCAAAGCACCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGCCTTCTTGACTCTTCTAGAAAAAACAACATCGGAACCACCAAGTTGGATGATTGGGTTCTGTGTCGTATATATAAGAAGAATTCGAGTTCGCAGAAAACTGAGCTAAGCTTTTGGGGTAAAGAATGCAGCAATGGATCATCGCCTTCTTCATCGTCCCACGTAGAGGACATGCTCGAATCCTTGCCGGAAATCGATGACCGGAGTTTAGCGCTGCCTCGCGTGAACTCGCTCAGAACGCTGCAGCATGATGAAAAGCTCGGTTTCCTCAACATGGGAACCGGGATTTTTGCGGATTGGGGCAACCCGACAGATTTGAACTCGGAGTTTGCGTCGGGTTGTCAAACCCAAGGGATGGTGAATTATGATTGCAATGACTTTTTCGTCCCTTCCGTGCCACCGTTTGGCCACGTGGATTTCACGGTGGGGTCAATGGAGGAGGAGGTTCAGAGTGGCGTGAGGGCTCAGGGCAATGGGTGTTTTCAACAGAATCCGAATCGGTTATTAATGGGCTCCTCCGGGGACCCGTTTGGGTTCGGGTACCCAGGTCAACATGTAGGGTTCGGGTTAAGAGAGTGA 990 0.4848 MGVPERDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGSKTNWIMHEYRLLDSSRKNNIGTTKLDDWVLCRIYKKNSSSQKTELSFWGKECSNGSSPSSSSHVEDMLESLPEIDDRSLALPRVNSLRTLQHDEKLGFLNMGTGIFADWGNPTDLNSEFASGCQTQGMVNYDCNDFFVPSVPPFGHVDFTVGSMEEEVQSGVRAQGNGCFQQNPNRLLMGSSGDPFGFGYPGQHVGFGLRE* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0090 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 295 - -
Apr5g0090 329 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Apr5g0090 329 PANTHER NAC TRANSCRIPTION FACTOR 56 1 295 - -
Apr5g0090 329 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Apr5g0090 329 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Apr5g0090 329 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0090 Apr-Chr5 832413 834226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0090 1 327 NAC Transcription Factor Family AT3G15500 57.018 5.36e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr5g0090 NAM 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0090 - - gmx:100811301 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0090 5 832413 834226 Apr5g0090 5 832413 834226 ECH