Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0089 ATGGTGAGCACCGACTCATCCACGGGTTCACAACAACCCAACCTGCCACCAGGGTTTCGGTTCCATCCCACAGATGAGGAACTTGTCGTTCATTACCTCAAGAAAAAGGTTGCCTCTGCTCCTCTTCCTGTTTCCATCATCGCTGAGGTTGATCTCTACAAGTTTGATCCCTGGGAGTTACCAGCTAAGGCATCGTTTGGGGAGGAAGAGTGGTACTTTTTTAGCCCAAGGGACAGGAAGTACCCGAATGGTGCGAGGCCAAACAGGGCTGCAACTTCAGGGTATTGGAAGGCCACAGGGACTGATAAGCCTGTGTGTAGTGGAACTCAGAAGGTTGGGGTGAAAAAATCTTTGGTTTTCTATGGAGGGAAGCCACCAAGAGGGGTTAAGACCGATTGGATCATGCATGAGTATCGTCTTGCTGATAACAAACCTAACAATAAGCCTCCTGGGTGTGACTTGAGCCACAAGAAAAACTCCCTAAGGCTGGATGATTGGGTTCTGTGCCGGATCTACAAGAAAGGCAATACACAAAAGTCACCTATGGATCATGACAAGGATGATTCCATGGATGACATGATTGGAGAAGTACCTCCTTCTATCAATGTGGGCCACATGAATGCAAGATTTCACCTTTCAAAAATGTCCACAAACTACAGTAGTGCATTATTGGAAAATGACAGAAACATGTTGGAAGGGGTGGTTATTGGCAATGGTGGGATTAGCACAACGTGTGCCATATCATCTCAGTTGGGCACCTCAAACTCCAAGGCCGAAGAGCTTCTTAATTTTGTCTCTCCGAACACTTCAGCCTCCAAAAGAACACTCTCATCACTGTATTGGAATGATAATAATATGAATAATAATGAGGATTTCGCTGGCACATCATCATGTAACAAACAATTCAATTTGGATAGTATTGAGAATGGAAGTGTTGTGAGGAATGAAGGGAATAATGCCACTGCTGGCTCCTTTGCAACTCTTCTTAACCAGCTTCCACAAACACCTTCATTGCACCAACAGACAATGATGGGGTCTATAGGAGATGGACTACTTAGAACACCATTTCAAATACAAGGGATGAATTGGTATGGCTAA 1098 0.4481 MVSTDSSTGSQQPNLPPGFRFHPTDEELVVHYLKKKVASAPLPVSIIAEVDLYKFDPWELPAKASFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVCSGTQKVGVKKSLVFYGGKPPRGVKTDWIMHEYRLADNKPNNKPPGCDLSHKKNSLRLDDWVLCRIYKKGNTQKSPMDHDKDDSMDDMIGEVPPSINVGHMNARFHLSKMSTNYSSALLENDRNMLEGVVIGNGGISTTCAISSQLGTSNSKAEELLNFVSPNTSASKRTLSSLYWNDNNMNNNEDFAGTSSCNKQFNLDSIENGSVVRNEGNNATAGSFATLLNQLPQTPSLHQQTMMGSIGDGLLRTPFQIQGMNWYG* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0089 365 MobiDBLite consensus disorder prediction 1 20 - -
Apr5g0089 365 PANTHER NAC TRANSCRIPTION FACTOR 56 1 341 - -
Apr5g0089 365 SUPERFAMILY NAC domain 6 174 IPR036093 GO:0003677|GO:0006355
Apr5g0089 365 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
Apr5g0089 365 MobiDBLite consensus disorder prediction 1 17 - -
Apr5g0089 365 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Apr5g0089 365 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 341 - -
Apr5g0089 365 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0089 Apr-Chr5 819219 821749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0089 19 364 NAC Transcription Factor Family AT3G15510 51.934 4.02e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr5g0089 NAM 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0089 - - vra:106763825 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0089 5 819219 821749 Apr5g0089 5 819219 821749 ECH