Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0074 ATGAACGAGAAGGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAAGATACTGGAAGGACTTCTTAAACTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGCCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACATTGGACACCTGGCTCCCGGAGCAGGTTGCATTCATTCAATCAATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCCACATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGGATGAGAAACCAAAATCACCTTCTAGAATACGAGAGAATACTCCTTCACATTGGCAAAAGCCTGTAGAAAGAGGTGGGCATAGTTATGCAGCTGCATCTGAGAATTGTTTTGAGGAAAGGAAGAAAATCCAACCATCCAATGCAATTCCCGCCACAAGAATTAGTGTTCCTGCTCCTCCCAAAGGACCTGAGCAAGTAATTCCTGTGATAGAGCCTCAACATATTGAGAAAGTGGAATCTGTGGTACCACCACCGCTAGCTGAAACTTCAAAACAGCCTACTGACACAAAACCAAATTCCCCTCCAAAAGTCAACTATGCTACAGACCTTTTTGACATGTTGTCTTTGGATGGTCCAAATGAAAAGGACTCAGGGGCAGCTGATGCTACGACTGATGACAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCCTCAACAGCCGAGAAAACTGGTGCTGGGAAAACAGTTGAGAGTACCACCCAGTCTACTTCTGGAATTGAAGATTTGTTTAAAGATTCACCTTCAGTTACACAAAGTTTAACTCCAGAAAAACCAAAAAAAGATGTTAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTACCCATCAACAGCAGCTAGCCATGCTGGCACATCAACAGACTCTTCTAATGGCTGCCGCTGCTAAATCTGCTGGTGGGGATTCCAAGTATGCTGCTAGCACACAACAACCAGGGTCCAATATCCCAGTCCAAAGTTGGCCAGCTGCTGGCTACCCAATTCCAGTATCAATGCCCGTGGGTGGTCAGGGAGATTTGCAGAAACTCATGCAGACAATGAACATGACTGCAGCGCATTCAGCTGGGAGTTCAGTTCAGTATCCACCATCTAGTTACTATGCTATGGGGCAAGCTGCTCCAGTTAATGGCGTGACGACAACGGGAGGGAGTAACAACCCTCAGTCAGCAGCTCAAGGATCATCGACCCCTTCAAAGACAGCGAATGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCAAAACACTGA 1428 0.4475 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPHYDRVGIENFIRAKYEEKRWVARDEKPKSPSRIRENTPSHWQKPVERGGHSYAAASENCFEERKKIQPSNAIPATRISVPAPPKGPEQVIPVIEPQHIEKVESVVPPPLAETSKQPTDTKPNSPPKVNYATDLFDMLSLDGPNEKDSGAADATTDDNNWAGFQSAAEASTAEKTGAGKTVESTTQSTSGIEDLFKDSPSVTQSLTPEKPKKDVKNDIMSLFEKGNMVSPFSTHQQQLAMLAHQQTLLMAAAAKSAGGDSKYAASTQQPGSNIPVQSWPAAGYPIPVSMPVGGQGDLQKLMQTMNMTAAHSAGSSVQYPPSSYYAMGQAAPVNGVTTTGGSNNPQSAAQGSSTPSKTANDYDFSSLTQGMFAKH* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0074 475 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Apr5g0074 475 CDD ArfGap 19 117 - -
Apr5g0074 475 PANTHER ARF GTPASE ACTIVATOR 1 474 - -
Apr5g0074 475 MobiDBLite consensus disorder prediction 436 463 - -
Apr5g0074 475 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Apr5g0074 475 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Apr5g0074 475 MobiDBLite consensus disorder prediction 206 313 - -
Apr5g0074 475 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Apr5g0074 475 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Apr5g0074 475 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Apr5g0074 475 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Apr5g0074 475 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Apr5g0074 475 MobiDBLite consensus disorder prediction 212 228 - -
Apr5g0074 475 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 474 IPR044520 GO:0005096
Apr5g0074 475 MobiDBLite consensus disorder prediction 254 308 - -
Apr5g0074 475 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0074 Apr-Chr5 704371 710598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0074 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 3.97e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0074 K12486 - gmx:100807561 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0074 5 704371 710598 Apr5g0074 5 704371 710598 ECH