Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0070 ATGGCTACTATCACAGACCAAGACTACTCACGTGCTTCTCACGTGCTCCATGACGCCACCACCTCAGACGACGACGCTCAGGACAGCGACGACGACGACGAAGAGGAGGAGAAGCACGCGCCGGACACCACCGAGTTCTCCGCCGTCCGCTGGCGATTGCCGGAGGTGTGCGGCGGCGCGCGGCGGAGGGGAGGATTGGGGCTGCGTCGGGTTTTGGACCCGAGGGCGAGATGGGTCCAGGAATGGAACCGGGTGTTCTTGCTAGTGTGCGCCATGGGGTTGTTCGTGGACCCTCTCTTCTTTTACGCGCTCTCCGTTAGTGAATCCTGCATGTGCGTCTTTGTTGACGGTTGGCTCGCCGTTACTGTAACGGTGCTGCGTTGCATGACGGACGCGTTCCACGTGTGGAACATGTTGCTGCGTTTCAAGATGGCGAAACGGTCGTTTGGATTGGGCGCCGCCGCAGCTTCGGCGGCGGACGGTGGCTCCTCCGACGGACTTATAGACACGAGGCCTGGCTCTGTTGCTCTTGGTTATATCAAGTCACGGACGGGCTTCTTCTTTGACTTGTTTGTTATTCTTCCTCTTCCCCAGATTATGCTTTGGGTGGCAATCCCCTCGCTGTTGGAGAAGGGTTCAGTTACGTTGGTGATGACAGTGTTCTTAATTATATTTCTCTTCCAATACCTTCCCAAAATTTATCATTCTGTTTGCCATCTACGATACACGCAAAACCTCTCTGGCTACATTTTTGGCACAGTTTGGTGGGGAATCGCCCTTAACATGATCGCTTATTTTGTTGCTTCCCATGCCGCAGGGGCATGTTGGTACTTGTTGGGGATTCAAAGGGCAAGCAAGTGTCTGAAAGAGCAATGTGGGAAAACAAGTGGCTGTGGCATGAAAATATTGTCTTGTCAAAACCCTATATATTATGGAAGCAATAACATGTTAAGGGACAAAGGAAGAATAGCATGGGCAGAGAACAGGGAAGTAAGGAATATGTGCTTAAATGGCCCTGACAACTACACATATGGAGCTTATAGATGGACCGTTCAGCTTGTCACTAATGATAGTCGATTGGAAAAGATACTATTCCCTATCTTTTGGGGCCTAATGACTCTCAGCACTTTCGGGAACCTAGAGAGCACAACGGAATGGCTAGAAGTAGTTTTCAACATCATTGTTTTAACTAGTGGCCTCCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAGAAACAAGCAATGCAATTGAAGATGAGGAACATTGAATGGTGGATGAGGAAAAGGAGGTTACCTCAAGGGTTTAGGCAGCGAGTGCGTAACTATGAAAGACAGCGTTGGGCTGCTATGCGTGGCGTTGATGAATGCGAAATGACCAAAAATCTTCCTGAGGGTTTAAGAAGAGACATCAAGTACCATCTTTGTTTGGACTTGGTCAGACAGGTGCCACTTTTTCAACACATGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAATAATAGCAAAAGAAGGAGACCCAGTTCAGAGAATGCTATTTGTTGTAAGGGGTCACCTTCAAAGTAGCCAAGTTCTAAGGGATGGTGTGAAAAGTTGTTGCATGTTAGGTCCAGGAAACTTCAGTGGCGATGAGCTTCTTTCGTGGTGTTTAAGGAGACCCTTCATAGAGCGTCTTCCACCATCATCATCCACACTCATCACATTAGAAACCACAGAGGCATTTGGTCTTGAAGCACAAGATGTTAAATATGTGACACAACATTTTAGGTACACATTTGTTAAGGAAAAGGTGAAAAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACTTGGGCTTCTGTGGCCATTCAATTGGCATGGAGAAGGTACAAACATAGGTTGACTTTGACTTCATTGTCCTTTATAAGGCCTAGGAGGCCTTTGTCAAGGTGCTCTTCCTTGGGAGAAGATAGGATTCGCCTCTACACGGCTTTGTTGACCTCACCAAAGCCTAATCAGGATGATTTTGACTTCTGA 2073 0.4761 MATITDQDYSRASHVLHDATTSDDDAQDSDDDDEEEEKHAPDTTEFSAVRWRLPEVCGGARRRGGLGLRRVLDPRARWVQEWNRVFLLVCAMGLFVDPLFFYALSVSESCMCVFVDGWLAVTVTVLRCMTDAFHVWNMLLRFKMAKRSFGLGAAAASAADGGSSDGLIDTRPGSVALGYIKSRTGFFFDLFVILPLPQIMLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRYTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRASKCLKEQCGKTSGCGMKILSCQNPIYYGSNNMLRDKGRIAWAENREVRNMCLNGPDNYTYGAYRWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEIIAKEGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAQDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWASVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRIRLYTALLTSPKPNQDDFDF* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0070 690 CDD CAP_ED 493 599 IPR000595 -
Apr5g0070 690 SUPERFAMILY cAMP-binding domain-like 419 607 IPR018490 -
Apr5g0070 690 MobiDBLite consensus disorder prediction 24 39 - -
Apr5g0070 690 Pfam Cyclic nucleotide-binding domain 514 601 IPR000595 -
Apr5g0070 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 19 687 - -
Apr5g0070 690 SUPERFAMILY Voltage-gated potassium channels 74 414 - -
Apr5g0070 690 ProSiteProfiles cAMP/cGMP binding motif profile. 493 603 IPR000595 -
Apr5g0070 690 Gene3D Jelly Rolls 491 609 IPR014710 -
Apr5g0070 690 Pfam Ion transport protein 82 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr5g0070 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 19 687 - -
Apr5g0070 690 MobiDBLite consensus disorder prediction 1 44 - -
Apr5g0070 690 Gene3D Helix hairpin bin 418 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0070 Apr-Chr5 647268 657719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0070 52 689 Ion Channels AT5G54250 77.519 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0070 K05391 - gmx:100783341 1178.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0070 5 647268 657719 Apr5g0070 5 647268 657719 ECH