Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0059 ATGTTCAATTGGAAGCAATACAAAAATAGACTGAGGAAAGAAGACATGGATCTGCCAACATTTGATTTGTCAATCATTGCTAACGCCACCAACAATTTTTCAAGCATAAATAAAGTGGGGGAAGGTGGATTTGGACCGGTCTATAAGGGTACACTAATAGATGGGCAGGAGGTTGCCATAAAAAGGCACTCAAAGTCCTCTGACCAAGGATTGGAAGAGTTTAAAAATGAAGTTGCATTGATTGCAAAACTTCAACATCGAAATCTTGTAAATCTTCTTGGTTGTTGCATTCAAGGAGAGGAAAAACTGTTGATCTACGAATACATGCCCAACAATAGCTTGGACTACTTCATCTTTGATGAACATAGAAGCAAGCTCTTGGATTGGATTCAGCGTTTCCACATTATTAGTGGTGTTGCTAGAGGACTTCTCTATCTTCATCAAGACTCTAGACTGAAAATTATTCACAGAGATTTGAAGACCAGCAATATCCTACTAGATGCCTATATGAATCCAAAAATTTCAGACTTTGGCCTTGCTCGGACATTTTGGGGAGATCAAGTTGAAGCCAACACAAAAAAAGTGGTCGGAACATATGGATACATACCACCAGAGTATGCTGTGCATGGTCATTATTCAGTAAAATCAGATGTCTTCAGTTTTGGAGTAATAGTATTAGAGATTGTGAGTGGGAAGAGGAATAGGGGGTTTTCTGACCCAGAACAATACCTAAATCTTCTTGGACATGCATGGAGACTATGGAATCAAGATAGACCATTGGAACTGATAGACAAACACTTGGCTGAAAGTGGCAAGTCTTTTGAAGTCATAAGATGCATACATGTTGGTCTGTTATGCGTACAAGAGAAACCAGAAGACAGGCCAGACATATCCTCTATTGTTCTTATGCTAAATGGTGAGAAAACTTTGCCTCAGCCAAAGGCTCCTGGATTTTACACTGGAAGTGATTTGCCTAACGCAGAAGCTTCATCTAGAATGTGCAATCCGTTCACCCTAAATAAGATGTCCATTACAATGTTTGAAGCAAGATGA 1053 0.3941 MFNWKQYKNRLRKEDMDLPTFDLSIIANATNNFSSINKVGEGGFGPVYKGTLIDGQEVAIKRHSKSSDQGLEEFKNEVALIAKLQHRNLVNLLGCCIQGEEKLLIYEYMPNNSLDYFIFDEHRSKLLDWIQRFHIISGVARGLLYLHQDSRLKIIHRDLKTSNILLDAYMNPKISDFGLARTFWGDQVEANTKKVVGTYGYIPPEYAVHGHYSVKSDVFSFGVIVLEIVSGKRNRGFSDPEQYLNLLGHAWRLWNQDRPLELIDKHLAESGKSFEVIRCIHVGLLCVQEKPEDRPDISSIVLMLNGEKTLPQPKAPGFYTGSDLPNAEASSRMCNPFTLNKMSITMFEAR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0059 350 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 347 - -
Apr5g0059 350 Pfam Protein tyrosine and serine/threonine kinase 36 302 IPR001245 GO:0004672|GO:0006468
Apr5g0059 350 ProSiteProfiles Protein kinase domain profile. 33 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0059 350 Pfam Domain of unknown function (DUF3403) 308 350 IPR021820 GO:0004674
Apr5g0059 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Apr5g0059 350 Gene3D Phosphorylase Kinase; domain 1 6 108 - -
Apr5g0059 350 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 2 347 - -
Apr5g0059 350 Gene3D Transferase(Phosphotransferase) domain 1 109 313 - -
Apr5g0059 350 CDD STKc_IRAK 39 306 - -
Apr5g0059 350 SMART serkin_6 33 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0059 350 SUPERFAMILY Protein kinase-like (PK-like) 18 304 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0059 Apr-Chr5 560511 562350 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0059 21 350 Receptor kinase-like Gene Family AT4G11530 56.805 1.03e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr5g0059 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0059 - - gmx:100786000 550.051