Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0056 ATGGAATTAGATTATGGTTTTGATTTCCAGGATTCTTTCCCATCCATGATTGCACGGCTAGGAGCTGAAGGGTTCATTGGAGAACTTTGTAATGGGTTTCGTTTGCTAATGGATGTGAACAAAGGGCTTATAACGTTCGAAAGCTTAAAGATGAGCACTTTGTTGCTTGGTTTGGAGGTGAGGGATGATGAGCTCGTGTGCATGCTAATGGAAGGTGATTTGGATGGGGATGGTGCTCTAAACCAAATGGAATTTTGCATTCTCATGTTTAGGTTGAGTCCATGTTTGATGGATATGCAAGGTCTGAGGAGTATGGGATGGATCATAAAATTGATCTCTTTTGCATTTTTAATATTCAATTTTTTAATGTGTTTTAGTTCAGTAGATATTCTAGCTGTGAATCAATCTATTATAGATGGTGAGAGTTTAGTTTCAGCAGATGGAACATTTGAAGTGGGTTTCTTCAGCCCCGGGAATTCAACAGGTAGATATTTGGGTGTGTGGTATAGGAATTTATCCCCTTTAACGGTTGTGTGGGTGGCCAATAGGGAAGCACCTTTGCAGAATGGTTCAGGAGTCTTAAAATTCAATGAAAAGGGGGTTCTTGTGATTTTGAATTGCTCAAATAGCTCTGTTTGGTCATCCAACATATCAAACCAAACAGTGAATAATCCAATTGCAAAGATCTTGGACTCGGGAAATCTTGTGGTAAAAAATGGACAGGATACTGAGGAGGAGCACTTTTTGTGGCAGAGTTTTGACTATCCATGTGATACAATGATGCCGGGAATGAAGCTTGGATGGAACTTGGTGACTGGTCTAGATAGATTTTTATCATCTTGGGAAAGTGAACATGATCCAGCTAAGGGAAAGTATTCTGTAAGGGTTGACCTAAGAGGGTATCCACAACTAGTTTTCATGAGGGGATCTACCATAAAGTTTAGACTGGGGTCATGGAATGGCATTTCTTCAACAGGATATCCAACTCAACAATTGAAGCAAAAACAAAGATACAAATTTGTCATGAATGCAAAAGAAGTATATCATGTGTATGAAAACCTTGATAGCTCTATGGTCTCCATATATACTTTGAACCCTTCTGGCATTATGCAGGGCTTAGCTTGGACAAGTAAGACAAGTGGTCAAATAGTTATTGCAGCTGGAGGGAGAGACACGTGCGATAATTATGCTTTGTGTGGAGCAAATTCGGTGTGCAATATTGATGGCAACACTCCCAGATGTGAATGCCTTAAAGGATGTGTTCCAAGCATTCCTGAACAATGGAATGTATCATATTGGTCTGGTGGTTGTGTTCCACGGAAAAAATCTATATGTGAAAACCACACCACCGATCGCTTTTGGAGGTACACAAACATGAAATTGCCAGACACATCATCATCATGGTTTAATAAGAGCATGAACCTTGAGGAATGTCAGAAGTTATGTCTGAAAAGCTGTTCTTGTACAGCATATGCAAATTTGGATATCCGTAGAGGAGGAAGTGGCTGTCTACTTTGGTTCGGTGATCTGGTTGACATGAGGAAATTCTCTCATCGGGGACAGGACCTTTACATCAGAGTTCCTGCAGAACTAGATAGCGTTGAGGTTCATGGCCACGGAAACCAGAAGAAGATCATAGGAATCACAATTGGTGTGTTTATTATTGGATTCATTGCGTGTGTCTGCAGAATAACACTTAGAAAACGAGCGGAAGCCAGAGTATCTTCTCATCTCCCATCATTTCAATGGGGGCAAGAATATTTTAGATTGAGGGAGGAAGATATGGAGTTGCCAACATTTGATTTTCCAGTCATTGCTAAAGCCACCAACAATTTTTCTAGCAGAAACAAACTAGGGGAAGGTGGATTTGGACCAGTGTATAAGGGTACACTGATAGATGGGCTAGAGGTAGCTGTGAAACGGCACTCAACGATGTCTGATCAAGGATTGGATGAGTTCAAGAATGAAGTTCTGTCGATTGCAAAACTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGCTGCATTCAAGAAGAGGAGAAAATGTTGATCTATGAATACATGCCCAACAAGAGCTTAGACCGTTTCATCTTTGATGGAACTAGAAGCAAGCTCTTGTCATGGTGTCAACGTTTCCATATTATCTGTGGCATTGCTCGAGGGCTTCTCTATCTTCACCAAGATTCTAGACTGAGAATTGTTCATAGAGATTTGAAAACTAGCAACATCCTACTAGATGCCCATATGAATCCAAAAATCTCAGACTTTGGCATGGCTCGGACTTTAGGGGGTGATCAAAATGAAGACAAAACCAAAAAAGTGGTTGGAACATATGGGTACATGCCTCCAGAGTATGCTGTGCATGGTCATTACTCTGTGAAATCAGATGTATTCAGTTTCGGTGTAATCGTACTAGAGATAATAAGTGGGAAAAAGAATAGGGGATTTTCTGTCCCGGAGCATTCTCTCAATCTTCTTGGACATGCATGGAGACTATGGATTGAAGACGGGCCAGCGGAACTGATAGATGAACACTTACATGAAAGATGTATTTTTTCTGAAGTCTTACGGTGCATACATGTGGCTTTGTTGTGTGTACAACAAAAACAAAGAGACAGGCCAGACATGTCCACTGTCATTCTTATGCTGAATGGTGAGAAGTTATTGCCTCAGCCAAAGGCTCCTGGATTTTATACTGGGAGGGGTTTACCTGGATCAATATCATCATCATCTAGAACATGCAATCTGTTATCCTCAAATGAGTTGTCCCTTACAATTTTTGAGGATAATCTTGTTCGTTCCTCAAGCAATTTTGTTCACATACGTGGCTCTTCATCATTTGAACACGTAATTTTAAACTCCACTTCATTGGACACATTGGCTCCTAATCAATCAATCCGAGATGGAGAGACTCTAGTTTCAAATGAAGGCACATTTGAAGTGGGCTTTTTCAGCCCTGGAACTTCAAAAAATCGATACTTGGGTATATGGTATATGAATGTATCCCCCTTTACAGTGGTGTGGGTGGCTAATAGAGAAAAACCACTTCAAAATAATTCAGGAGTTTTAATAGTTAATGGAAAAGGGGTTCTTGTGATTCTTGATGACTCAAATAGCACAATTTGGTCATCTAACACACCAAAGAAAGTAATAAAGGATCCTATTGCACAACTCTTAGACTCAGGAAACCTTGTAGTGAAAAATGGACAAGGCAGAAATGAGCACAATTTTTTAACTTTATCATCTTGGAAAAATGAAGATGATCCTGCTGAGGGAGAATATTCTATAAGAATTGATCTTAGAGGATATCCACAGTTTTTTGGATTCAAGGGATCCATGATAACATATAGAGCAGGGTCATGGAATGGGCATGCTTTCACGGGATATCCAATTCATCAACTTGCAGAAAAGTATAGTTATGAATTTGTGTTTAATGAAAAAGAAGTGTACTATGAGTACAAGCCCATTGATAGATCAGTTTTCTATATGTATACACTTACCCCTTTAGGATTTGGGCAGCGTTTTGTTTGGACAAGTCAAACATGTAGTAGAAGAGTTATCCCAACTGGGGGAGCAGATCCATGTGAAAATTATGCCTTGTGTGGTGCCAATTCTATATGCACTATGGATGGTAATGTTCCAAAATGTGAATGCCTAAAAGGGTATGTTCCAAACTTTCCCCAACAATGGAATATGTCATATTGGTCTAGCGGTTGTGCTCCAAGGAATAAATCTATGTTTACAAATAGTACATCAGATGGCTTTTGGAGGTACTCAAACATGAAATTGCCAGATACATCTTTGTCGTGGTTTAGCAAGACCTTGAACCTTGAAGAATGTCAGAAATCGTGTCTTAAAAACTCTTCTTGTACATCATATGCAAATTTGGATATTCGTAGTGGGGGAAGTGGCTGTCCACTTTGGTTTGGTGATATGATTGACATGAGGACATTCTCTAAAGGGGGACAAGACCTTTATATCAGAGTCCCATTTTCAGAACTAGATCTAGTTGCAGTTAATGACAACATAAATGAGAAGAAAATTGTGGCAGGAATTACAATTGGTGTGATTATTTTTACCTTAACTACATGGGGCTTCGCAATGATACTTAAAAAGCGAGGGACAGCAAGAGTACGTTGCACAGAGCATTACCAAAATATACTAAGGAAGGAAGACATTGATCTGCCAACATTTGATTTGCCTATTATAGTTAAAGCCACTGAAAACTTTTCATACAAAAACAAACTGGGAGAAGGTGGCTTTGGACCAGTATACAAGGGAACACTGATAGATGGGCAAGAGTTGGCAGTGAAAAGGCTCTCAAAGAATTCTGCACAAGGGTTGGAGGAGTTCAAAAATGAAGTGGTGTTGATCACCAAACTTCAGCATCGTAACCTTGTGAAGCTTCTCGGATGCTGCATTCAAGGAGAAGAAATAATGTTGATCTATGAATACATGCCCAACAAAAGCTTGGACTACTTTATTTTCGATGAAACGCAAAGGACATTGCTTAATTGGCAGAGGCGTTTCAAAATTATATGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCTAGATTGAGAATTATTCATAGAGATCTAAAATCCAGCAATATTCTTCTAGATGCAAATTTGGATCCAAAAATATCAGACTTTGGTCTCGCTCGAAAATTGTTAGGAGAACAAATTGGAGCAAACACAAACAAGGTGTCAGGAACATATGGTTATATGCCGCCTGAGTATGCTACACGCGGGCATTTTTCAATAAAATCCGATGTATTTAGTTTTGGTGTGATAGTTCTTGAGATAATAAGTGGGAAGAAGAATAGGGAATTTTCACACCCAGAGCATTGTCATAATCTTCTTGGACATGCATGGAAACTATGGAGTGAAGGGAGGCAACTGGAACTATTGGATGAAGTGTTAGGAGAAAAATACACACCTTCTGAAGTGATACAATGCATACAAGTGGGCCTATTATGTGTGCAACAAAAACCAGAAGATAGACCAGATATGTCATCAGTAGTTCTTATGTTAAATGGTGATAAATTGTTGCTCAAACCAAAAGTTCCTGGATTTTACATTGAAAAAGATACTATTACAGAAGCAAATACCCAGTTGGCAAAATGCACACTAGTGTTGCCCGATGAAGTTTCCATTACATTATTAGAGGCAAGATAG 5187 0.3941 MELDYGFDFQDSFPSMIARLGAEGFIGELCNGFRLLMDVNKGLITFESLKMSTLLLGLEVRDDELVCMLMEGDLDGDGALNQMEFCILMFRLSPCLMDMQGLRSMGWIIKLISFAFLIFNFLMCFSSVDILAVNQSIIDGESLVSADGTFEVGFFSPGNSTGRYLGVWYRNLSPLTVVWVANREAPLQNGSGVLKFNEKGVLVILNCSNSSVWSSNISNQTVNNPIAKILDSGNLVVKNGQDTEEEHFLWQSFDYPCDTMMPGMKLGWNLVTGLDRFLSSWESEHDPAKGKYSVRVDLRGYPQLVFMRGSTIKFRLGSWNGISSTGYPTQQLKQKQRYKFVMNAKEVYHVYENLDSSMVSIYTLNPSGIMQGLAWTSKTSGQIVIAAGGRDTCDNYALCGANSVCNIDGNTPRCECLKGCVPSIPEQWNVSYWSGGCVPRKKSICENHTTDRFWRYTNMKLPDTSSSWFNKSMNLEECQKLCLKSCSCTAYANLDIRRGGSGCLLWFGDLVDMRKFSHRGQDLYIRVPAELDSVEVHGHGNQKKIIGITIGVFIIGFIACVCRITLRKRAEARVSSHLPSFQWGQEYFRLREEDMELPTFDFPVIAKATNNFSSRNKLGEGGFGPVYKGTLIDGLEVAVKRHSTMSDQGLDEFKNEVLSIAKLQHRNLVKLLGCCIQEEEKMLIYEYMPNKSLDRFIFDGTRSKLLSWCQRFHIICGIARGLLYLHQDSRLRIVHRDLKTSNILLDAHMNPKISDFGMARTLGGDQNEDKTKKVVGTYGYMPPEYAVHGHYSVKSDVFSFGVIVLEIISGKKNRGFSVPEHSLNLLGHAWRLWIEDGPAELIDEHLHERCIFSEVLRCIHVALLCVQQKQRDRPDMSTVILMLNGEKLLPQPKAPGFYTGRGLPGSISSSSRTCNLLSSNELSLTIFEDNLVRSSSNFVHIRGSSSFEHVILNSTSLDTLAPNQSIRDGETLVSNEGTFEVGFFSPGTSKNRYLGIWYMNVSPFTVVWVANREKPLQNNSGVLIVNGKGVLVILDDSNSTIWSSNTPKKVIKDPIAQLLDSGNLVVKNGQGRNEHNFLTLSSWKNEDDPAEGEYSIRIDLRGYPQFFGFKGSMITYRAGSWNGHAFTGYPIHQLAEKYSYEFVFNEKEVYYEYKPIDRSVFYMYTLTPLGFGQRFVWTSQTCSRRVIPTGGADPCENYALCGANSICTMDGNVPKCECLKGYVPNFPQQWNMSYWSSGCAPRNKSMFTNSTSDGFWRYSNMKLPDTSLSWFSKTLNLEECQKSCLKNSSCTSYANLDIRSGGSGCPLWFGDMIDMRTFSKGGQDLYIRVPFSELDLVAVNDNINEKKIVAGITIGVIIFTLTTWGFAMILKKRGTARVRCTEHYQNILRKEDIDLPTFDLPIIVKATENFSYKNKLGEGGFGPVYKGTLIDGQELAVKRLSKNSAQGLEEFKNEVVLITKLQHRNLVKLLGCCIQGEEIMLIYEYMPNKSLDYFIFDETQRTLLNWQRRFKIICGIARGLLYLHQDSRLRIIHRDLKSSNILLDANLDPKISDFGLARKLLGEQIGANTNKVSGTYGYMPPEYATRGHFSIKSDVFSFGVIVLEIISGKKNREFSHPEHCHNLLGHAWKLWSEGRQLELLDEVLGEKYTPSEVIQCIQVGLLCVQQKPEDRPDMSSVVLMLNGDKLLLKPKVPGFYIEKDTITEANTQLAKCTLVLPDEVSITLLEAR* 1729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0056 1728 Gene3D Hepatocyte Growth Factor 445 524 - -
Apr5g0056 1728 Gene3D Hepatocyte Growth Factor 1246 1326 - -
Apr5g0056 1728 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Apr5g0056 1728 Pfam D-mannose binding lectin 1005 1072 IPR001480 -
Apr5g0056 1728 Pfam D-mannose binding lectin 176 281 IPR001480 -
Apr5g0056 1728 SUPERFAMILY EF-hand 24 95 IPR011992 -
Apr5g0056 1728 SUPERFAMILY Protein kinase-like (PK-like) 594 883 IPR011009 -
Apr5g0056 1728 ProSiteProfiles Protein kinase domain profile. 1410 1687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0056 1728 CDD PAN_AP_plant 442 528 - -
Apr5g0056 1728 ProSiteProfiles PAN/Apple domain profile. 445 528 IPR003609 -
Apr5g0056 1728 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 119 928 - -
Apr5g0056 1728 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 948 1071 - -
Apr5g0056 1728 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1078 1724 - -
Apr5g0056 1728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1531 1543 IPR008271 GO:0004672|GO:0006468
Apr5g0056 1728 SMART serkin_6 1410 1681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0056 1728 SMART serkin_6 612 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0056 1728 SMART ntp_6 448 527 IPR003609 -
Apr5g0056 1728 SMART ntp_6 1250 1329 IPR003609 -
Apr5g0056 1728 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 948 1071 - -
Apr5g0056 1728 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 119 928 - -
Apr5g0056 1728 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1078 1724 - -
Apr5g0056 1728 SUPERFAMILY alpha-D-mannose-specific plant lectins 177 287 IPR036426 -
Apr5g0056 1728 CDD STKc_IRAK 1416 1683 - -
Apr5g0056 1728 Pfam PAN-like domain 1250 1315 IPR003609 -
Apr5g0056 1728 Pfam PAN-like domain 445 513 IPR003609 -
Apr5g0056 1728 ProSiteProfiles Bulb-type lectin domain profile. 957 1079 IPR001480 -
Apr5g0056 1728 ProSiteProfiles Protein kinase domain profile. 612 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0056 1728 CDD B_lectin 134 256 IPR001480 -
Apr5g0056 1728 CDD B_lectin 963 1072 IPR001480 -
Apr5g0056 1728 ProSiteProfiles EGF-like domain profile. 1191 1228 IPR000742 -
Apr5g0056 1728 CDD STKc_IRAK 618 885 - -
Apr5g0056 1728 SUPERFAMILY Protein kinase-like (PK-like) 1395 1681 IPR011009 -
Apr5g0056 1728 ProSiteProfiles Bulb-type lectin domain profile. 128 250 IPR001480 -
Apr5g0056 1728 ProSiteProfiles PAN/Apple domain profile. 1239 1330 IPR003609 -
Apr5g0056 1728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Apr5g0056 1728 Gene3D - 7 104 - -
Apr5g0056 1728 SMART blect_4 134 256 IPR001480 -
Apr5g0056 1728 SMART blect_4 963 1089 IPR001480 -
Apr5g0056 1728 Gene3D Transferase(Phosphotransferase) domain 1 1486 1688 - -
Apr5g0056 1728 Gene3D Transferase(Phosphotransferase) domain 1 688 889 - -
Apr5g0056 1728 Pfam S-locus glycoprotein domain 314 422 IPR000858 GO:0048544
Apr5g0056 1728 Pfam S-locus glycoprotein domain 1116 1225 IPR000858 GO:0048544
Apr5g0056 1728 SUPERFAMILY alpha-D-mannose-specific plant lectins 1005 1123 IPR036426 -
Apr5g0056 1728 Gene3D Phosphorylase Kinase; domain 1 580 687 - -
Apr5g0056 1728 Gene3D Phosphorylase Kinase; domain 1 1372 1485 - -
Apr5g0056 1728 Pfam Protein tyrosine and serine/threonine kinase 615 879 IPR001245 GO:0004672|GO:0006468
Apr5g0056 1728 Pfam Protein tyrosine and serine/threonine kinase 1412 1679 IPR001245 GO:0004672|GO:0006468
Apr5g0056 1728 Pfam EF-hand domain pair 41 91 IPR002048 GO:0005509
Apr5g0056 1728 CDD PAN_AP_plant 1249 1330 - -
Apr5g0056 1728 Gene3D - 124 253 IPR036426 -
Apr5g0056 1728 Gene3D - 952 1082 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0056 Apr-Chr5 509776 525481 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0056 545 898 Receptor kinase-like Gene Family AT4G23190 51.676 6.33e-111 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr5g0056 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0056 - - aprc:113865090 3513.78