Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0042 ATGGCCATTTTCACTTTCCTATCTGTTTTTGCCAAACTTCTAATATGGTTCCCTCCATTTTTATGTGCTAATGATACCATTAGCATCTCGCAATCACTTCCTGAGGGTAGCACCTTGGTGTCAAAAGATGGAACCTTCGAAATGGGTTTCTTCAGTCCAAGCAATAATAACAACACAAATCGCTATGTCGGAATCTGGTACAAAAATATCAAAATTAGAACCATTGTTTGGGTTGCTAATCGTGAAAATCCAGTTAAAGATAACTCCAGCAAGTTGAGCATGAGTACACAAGGAAAACTTGTGATCCTTAGCAAGAACAATACTGTTGTTTGGTCAGCAAACTCAACAGAAACAACACATGCACTTAGTCCAATTGTTCAGCTTTTAGACTCTGGAAACCTAGTACTAAGAAATGAGAATGACTCAAACCCACAAAACTACTTGTGGCAAAGCTTTGACTACCCCTGTGATACATTTTTACCAGGAATGAAGATTGGATGGAACCTAAAGACGGGTCTTAATCGGCGTTTTACGGCGTGGAAGAATTGGGATGATCCTTCACCAGGGGACTTCATTTGGGGTATGGTACTTGGTAACACTTCTGAATTGGTTATGTGGAAAGGTTCTAGTGAGTACTATAGGAGTGGTCCTTGGAATGGTGTTAGATTCTATGGCAAAACAACACCCCTTTTCAACTTAGAGTTGGTGTCTACTATTGATGAGGTGTTTTACACTTACAACATAGAGAATAAGTCCTTGATCACAAGAGTTGTTATTAATCAATCTATTTATTATCGCCAGCGCTATAATTGGAATGAAGCAAACCAAACTTGGAAGCTTTATTCATCAGTGCCAAGAGACAATTGTGACAATTATAATCTTTGTGGTTCATATGGAAATTGTATTGTGAGTGAGTCACCACCCTGCCAGTGTTTAACGGGCTTCAAGCCAAAATCAGTTCAAAATTATGAGGCTTTGGATTGGAGCCAAGGATGTGTGCTTAGTGAACAATGGAGCTGTGGGGTCAAAAACAAAGATGGTTTTAGAAAATTTAGTGGGCTGAAATTGCCAGATACTACCAAGTCTTGGGTGGATGGAAACTTAACACTTGAAGGTTGTAGAACTAAATGCTTGGAAAACTGTTCTTGCACAGCCTATGCAAATTTAGATGTCAGGGGTGATGGCAATGGTTGTATCATTTGGTTTGGAGCACTAGTTGACTTAAGGGTGGCTTCTGTTCCTGGGCAAGATCTATATGTTCGAATGGCTACTTCAGAAACTGATGAAAAGCGAGGGCATAAGAAGATGGTAGCGGTGGTTATTCCAGTTGTGCTCTTGGCTTTTTTGATTGTTTTCATTTTTACCTATAGCTTCTGGCGGAAAAGAAAACTTAGAGAAAATGCCTCAGAAGAAAATAAAGATGAAGAGCATGAAGAAGACTTAGACTTGCCTTTCTTTGAATTTGCTACCATAGTTCGTGCCACTAATAACTTCTCAAGTGACAAGAGGCTTGGCCAAGGTGGTTTTGGGCCTGTGTATAGGGGCACACTAGCAGATGGACAGGAAATTGCTGCCAAGAGACTTTCAAATAATACTGGACAGGGAACAAAAGAGTTCAAGAATGAAGTTATATTGTGTGCCAAACTTCAGCATCGGAATCTTGTTAAAGTTCTCGGTTGTTCCACTCAAGGAGATGAAAAAGTTCTCATCTATGAATACATGCCAAATAAAAGCCTAGATTCCTTTCTTTTCGATTCCTCCCAAAGTGAACTCCTAAATTGGTCTAAGCGCTTCAACATTATATTTGGAATTGCTCGGGGACTTCTTTATCTTCATCAAGATTCTAGATTAAGAATCATTCATAGAGATTTAAAAGCAAGTAATATTCTACTAGATGGTGAGCTAAATCCAAAAATTTCTGATTTTGGCGTGGCACGAATGTTTAGTGGAAATCAAACCGAAGGGAACACAAAAATGGTGACTGGAACATATGGCTACATGGCACCAGAATATGCAATTGATGGGCTACTTTCTATCAAATCTGACGTATATAGCTTTGGTGTACTATTACTGGAGATAATAAGTGGGAAGAAGAACAGAGGAATTTTCTTTCCAAATCATGGATTAAATCTATTAGGACATGCATGGAAATTGTGGAAAGAAGACACTCCAGTGAAATTAGTTGATGCTTCTTTGGGTGATACCATCACCATGTCAGAAGTACTACGCTGCATTCATGTTGGTCTTTTATGCGTGCAATTGCATCCTGAAGACAGGCCAAACATGGCATCAGTGATAGTGATGTTGAGCAGTGAAAATACTTTGCCACAGCCTAAGGAACCCGGTTTCCTTATTGAAAGAATGTCGATTGCCGGAGAATCTTCGAGTAGCAATCAGATTAATTCTTCTACTAATGAATTAACTGTGACACTCTTAGAGGCTAGATAG 2448 0.393 MAIFTFLSVFAKLLIWFPPFLCANDTISISQSLPEGSTLVSKDGTFEMGFFSPSNNNNTNRYVGIWYKNIKIRTIVWVANRENPVKDNSSKLSMSTQGKLVILSKNNTVVWSANSTETTHALSPIVQLLDSGNLVLRNENDSNPQNYLWQSFDYPCDTFLPGMKIGWNLKTGLNRRFTAWKNWDDPSPGDFIWGMVLGNTSELVMWKGSSEYYRSGPWNGVRFYGKTTPLFNLELVSTIDEVFYTYNIENKSLITRVVINQSIYYRQRYNWNEANQTWKLYSSVPRDNCDNYNLCGSYGNCIVSESPPCQCLTGFKPKSVQNYEALDWSQGCVLSEQWSCGVKNKDGFRKFSGLKLPDTTKSWVDGNLTLEGCRTKCLENCSCTAYANLDVRGDGNGCIIWFGALVDLRVASVPGQDLYVRMATSETDEKRGHKKMVAVVIPVVLLAFLIVFIFTYSFWRKRKLRENASEENKDEEHEEDLDLPFFEFATIVRATNNFSSDKRLGQGGFGPVYRGTLADGQEIAAKRLSNNTGQGTKEFKNEVILCAKLQHRNLVKVLGCSTQGDEKVLIYEYMPNKSLDSFLFDSSQSELLNWSKRFNIIFGIARGLLYLHQDSRLRIIHRDLKASNILLDGELNPKISDFGVARMFSGNQTEGNTKMVTGTYGYMAPEYAIDGLLSIKSDVYSFGVLLLEIISGKKNRGIFFPNHGLNLLGHAWKLWKEDTPVKLVDASLGDTITMSEVLRCIHVGLLCVQLHPEDRPNMASVIVMLSSENTLPQPKEPGFLIERMSIAGESSSSNQINSSTNELTVTLLEAR* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0042 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 186 IPR036426 -
Apr5g0042 815 Pfam Domain of unknown function (DUF3403) 770 815 IPR021820 GO:0004674
Apr5g0042 815 Gene3D Phosphorylase Kinase; domain 1 458 573 - -
Apr5g0042 815 SMART serkin_6 498 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0042 815 Coils Coil 460 480 - -
Apr5g0042 815 CDD PAN_AP_plant 339 423 - -
Apr5g0042 815 Pfam Protein tyrosine and serine/threonine kinase 501 766 IPR001245 GO:0004672|GO:0006468
Apr5g0042 815 PIRSF SRK 1 815 IPR024171 GO:0004674
Apr5g0042 815 Pfam D-mannose binding lectin 74 181 IPR001480 -
Apr5g0042 815 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Apr5g0042 815 CDD B_lectin 30 155 IPR001480 -
Apr5g0042 815 ProSiteProfiles Protein kinase domain profile. 498 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0042 815 Pfam PAN-like domain 340 408 IPR003609 -
Apr5g0042 815 Gene3D Hepatocyte Growth Factor 339 418 - -
Apr5g0042 815 SMART ntp_6 343 422 IPR003609 -
Apr5g0042 815 Gene3D Transferase(Phosphotransferase) domain 1 574 779 - -
Apr5g0042 815 CDD STKc_IRAK 504 769 - -
Apr5g0042 815 SMART blect_4 30 155 IPR001480 -
Apr5g0042 815 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 812 - -
Apr5g0042 815 Pfam S-locus glycoprotein domain 213 319 IPR000858 GO:0048544
Apr5g0042 815 ProSiteProfiles Bulb-type lectin domain profile. 24 149 IPR001480 -
Apr5g0042 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Apr5g0042 815 SUPERFAMILY Protein kinase-like (PK-like) 481 779 IPR011009 -
Apr5g0042 815 PANTHER - 23 812 - -
Apr5g0042 815 Gene3D - 21 152 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0042 Apr-Chr5 396475 400335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0042 436 799 Receptor kinase-like Gene Family AT4G23190 50.938 5.07e-127 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr5g0042 PK_Tyr_Ser-Thr 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0042 - - gmx:100790436 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0042 5 396475 400335 Apr5g0042 5 396475 400335 ECH