Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0039 ATGTCAGATGATCAATTTCCAGCAAGTGGAAACTGGTGGGAATCAGCTAGAAACGTGAGGTTTGAGAGTGGGGAATCGCAGTCTATTTCTTCATCTTCTGGACTTACCAACATAGGAAACTTTGGGTGGCAACAACATGATACGGTTCAGCAAGACATGAAGCCAAGGTCTAATTCTTCTATGGACAACTCTGTCTCAGGTAGTTCCTCTTTGGTTTTCCATGATACCCATCATCAGAAACAGCTTCAGCCTCATGATTCTGCCACTTCTTCCAATGATCCCAACTTGCACATGATGGGTTTGGGCCTTTCATCCCAAGCCATGGATTGGAATCAAGCATCTTTGTTGCGAGGTGAGAAGGGTTCAGAGGGGAGTTTCAGGTCCATGTTGCAAGAGAATTTGAGCTCATCAAGCCCCAATTTTCAGCATGAAACTGGGAATAACAATATTGGGTTGTCTCCTCATCATGTTCAAGTTCATTGGAGACCTGAAAAGTTGTTCTCTCCTGAGTCATCTACCAATGAATTCAAAAGGGGTTTCTCTTTGGATCAAACACAGTTTAGTCCTCAATATAGCTCTGGGGACAGCACTGTCACAAGTCAAGGTTTGCCTTGTACTTTTCAGATGGATTATGTTGGGAACCCTTCTTCAATATTGCAAGGACTATTAGGATCCGAGAGCAATAATAACCAACCTCAACAAGGTGGTGCTGCTTCATTTGAGAGCCGAACCATGAATTTTCCTTACTCATCAGCAGCAAGTTATGGACTAGGTTCTAATATTGAGTTGGTGCCTTCTTGGTCTAAAGTTCCTCAGTTCTTGAGAGCTTCACCTCCGAAACAACCACCCAATAACCAATTGCATTTCACCAATAACGCCCCCTTTTGGAATGCTAATTCTGAGGCTGCTATTAAGGATGCTCGATCCAGCTTCATCCCTTCATTGCAGCCCCCCTTTTCCACATCGAATTTCGATGTACAATCAAAGAATATATCTGACGTTAGGGACTCGGGTGCTGTGGTGAAGAAAAGTGGGGGAGAGCCTGCACCCAAAAGGCCCAGGAACGAAACCCCATCGCCTTTACCAGCTTTTAAGGTGAGAAAGGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCATCAGTGCTTTCTGAAGCCATCGAATATATCAAATTCCTCCATGAACAAGTGACCGTTTTAAGCACCCCATATATGAAAAGTGGTGCTCCGATACAGCATCAGCAGAGTTCTGGTAAATCTAAGGAATGTGAGGGACCAAAGCAGGATCTAAGAAGCCGAGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCTGTGACTCACGAACCCACTGTTGAATATTGGACACCAACATTTGGAGGAACTTATAGATAG 1428 0.4426 MSDDQFPASGNWWESARNVRFESGESQSISSSSGLTNIGNFGWQQHDTVQQDMKPRSNSSMDNSVSGSSSLVFHDTHHQKQLQPHDSATSSNDPNLHMMGLGLSSQAMDWNQASLLRGEKGSEGSFRSMLQENLSSSSPNFQHETGNNNIGLSPHHVQVHWRPEKLFSPESSTNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCTFQMDYVGNPSSILQGLLGSESNNNQPQQGGAASFESRTMNFPYSSAASYGLGSNIELVPSWSKVPQFLRASPPKQPPNNQLHFTNNAPFWNANSEAAIKDARSSFIPSLQPPFSTSNFDVQSKNISDVRDSGAVVKKSGGEPAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKECEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0039 475 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Apr5g0039 475 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 422 IPR036638 GO:0046983
Apr5g0039 475 MobiDBLite consensus disorder prediction 335 362 - -
Apr5g0039 475 MobiDBLite consensus disorder prediction 23 42 - -
Apr5g0039 475 MobiDBLite consensus disorder prediction 419 438 - -
Apr5g0039 475 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 464 - -
Apr5g0039 475 CDD bHLH_AtbHLH_like 361 412 IPR045239 -
Apr5g0039 475 MobiDBLite consensus disorder prediction 49 98 - -
Apr5g0039 475 Gene3D - 365 426 IPR036638 GO:0046983
Apr5g0039 475 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 464 - -
Apr5g0039 475 SMART finulus 366 410 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0039 Apr-Chr5 372168 376356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0039 117 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 48.052 5.44e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0039 - - gmx:100818424 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0039 5 372168 376356 Apr5g0039 5 372168 376356 ECH