Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0025 ATGGCTATGAGGGCAACAACGGCGGCGCACCGTGGTTTGCGGCGGCTATTCTGCACAAATTCAGCCTCTTTCCCTTTCATTCCTTCGCCGCCGTCAGGGGCCTCTCCCGCCCCCGCCAGACAGACGGCTGAACCCAACACCAACCTCTTTGTCTCGGGGCTTAGCAAGCGTACTACTACCGAAAGACTACGAGAAGAATTCTCGAAGTTTGGTGAAGTTGTCCATGCGAGGGTGGTAACTGATCGAGTCTCAGGTTATTCTAAGGGGTTTGGTTTTGTGAAATATGCTACAATAGAAGACGCTGCTAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCGCGAGATTATGTAAATAACAATAATCCTCAATATGGCCGACAGTGA 432 0.5 MAMRATTAAHRGLRRLFCTNSASFPFIPSPPSGASPAPARQTAEPNTNLFVSGLSKRTTTERLREEFSKFGEVVHARVVTDRVSGYSKGFGFVKYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPRDYVNNNNPQYGRQ* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0025 143 SMART rrm1_1 48 121 IPR000504 GO:0003723
Apr5g0025 143 PANTHER TRANSFORMER-2-RELATED 1 142 - -
Apr5g0025 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 115 IPR000504 GO:0003723
Apr5g0025 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Apr5g0025 143 SUPERFAMILY RNA-binding domain, RBD 34 141 IPR035979 GO:0003676
Apr5g0025 143 MobiDBLite consensus disorder prediction 29 55 - -
Apr5g0025 143 Gene3D - 28 134 IPR012677 -
Apr5g0025 143 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 142 - -
Apr5g0025 143 MobiDBLite consensus disorder prediction 39 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0025 Apr-Chr5 177551 179982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0025 27 130 Eukaryotic Initiation Factors Gene Family AT4G34110 32.692 4.60e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0025 - - gmx:100784609 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0025 5 177551 179982 Apr5g0025 5 177551 179982 ECH