Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0011 ATGGACTCAAACCAGTTTTTCAGAGTGACTAGTTCAGCAGGAATCCCTTACACATCATCTTATCTTCCTATTTCTCCAATACCAAACCGGTTCCTTGGATCCTCGAAACTTGACATAGGAAACTCACCTAATTCGTCACTTTTTACTCATTTTGATTCTGAGACTATCTCTTCTGCACTGAGTGACAGCCAGGAACAGCACAGCTCCGGGGAAATTCACTCTGGTAGCAACCCTTCTTGTAACTCTTTTCAGGATAGCAAACATTTTTTGCAAGACAGTGTGCATCTATCTGCTAGGAGCTTTCTGGGGCATGATGCAAGCTATGCCCATGAAAACAGACATTCATTTCTGGAACTAGAAACTGTTCTAATGGCACCTGATGGAGATGATCAAGTCACCACATCAAACACATCTGGCCAAAGAAATAGGTTCTGTAGCCATGAGTGCCAGTCAAGTGAGGTAGCATATGTAGAGAAGCATCACAAATCAATGGAGGAAGCGTCAATAGAAAGATTCCCATCAAGCAATTTGAAACAACTGCTGATTGTGTGTGCCAAAGCATTGTCTGACAACAACATGAAAGATTTTGCTCAACTGATAGAAAAGGGTAAAAGTGTTGTGTCTATAACTGGGGAGCCAATCCAACGGCTCGGTGCTTATTTGGTAGAAGGGCTTGTTGCAAGGAAAGAGGCATCAGGGAATAACATCTACCGTGCCCTTAGGTGCGGAGAGCCTGAGGGCAAAGACTTGCTCTCTTACATGCAAATGCTCTATGAAATCTGCCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCTATTGCTGAAGCTTGTAGGGATGAGGACTTCATTCACATCATAGACTTTCAGATTGGTCAGGGAATTCAATGGATGACCCTTCTTCAAGCTCTTGCAGCAAGACCTGGTGGAGCTCCACATGTCCGAATCACTGGGATTGATGATCCTGTTTCAAAATATGCTCGTGGTGGTGGACTAGAAGCAGTTGGAAAAAGATTGGCTGTGATCTCTCAGACATATAACATCCCAGTTGAGTTCCATGGTGTGCCTGTTTTAGCTCCAAATGTGACAAGAAACATGCTTGATATTAGGCCTGGTGAGGCTTTGGCTGTGAACTTTCCCTTGCAACTCCATCACACTGCTGATGAGAGTGTTGATGTAAGTAATCCAAGAGATGGACTTCTGAGATTGGTGAAATCACTTTCTCCCAAGGTAACTACATTGGTGGAGCAAGAGTCAAACACAAATACCACTCCTTTCTTCAACAGGTTTGTAGAAACCTTGGATTATTACTTGGCAATATTTGAGTCCATTGATGTGTCTCTTTCAAGAAAGACCAAGGAAAGGATTAATGTGGAGCAACACTGTTTGGCTCGAGATATTGTCAACATTATTGCTTGTGAAGGGAAGGAAAGGGTAGAGAGACATGAACTGCTAGGCAAGTGGAAGTCTAGGTTGACAATGGCTGGCTTTCGCCAATACCCTCTGAGTTCTTATGTTAATTCTGTCATAAGAAGCTTGCTGAGATGCTATTCAGAACATTATAATCTTGTGGAGAAGGACGGGGCCATGTTGTTGGGATGGAAGAACAGAAATTTGATATCAGCTTCAGCCTGGTATTGA 1644 0.4313 MDSNQFFRVTSSAGIPYTSSYLPISPIPNRFLGSSKLDIGNSPNSSLFTHFDSETISSALSDSQEQHSSGEIHSGSNPSCNSFQDSKHFLQDSVHLSARSFLGHDASYAHENRHSFLELETVLMAPDGDDQVTTSNTSGQRNRFCSHECQSSEVAYVEKHHKSMEEASIERFPSSNLKQLLIVCAKALSDNNMKDFAQLIEKGKSVVSITGEPIQRLGAYLVEGLVARKEASGNNIYRALRCGEPEGKDLLSYMQMLYEICPYLKFGYMAANGAIAEACRDEDFIHIIDFQIGQGIQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGGGLEAVGKRLAVISQTYNIPVEFHGVPVLAPNVTRNMLDIRPGEALAVNFPLQLHHTADESVDVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFVETLDYYLAIFESIDVSLSRKTKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYSEHYNLVEKDGAMLLGWKNRNLISASAWY* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0011 547 ProSiteProfiles GRAS family profile. 168 547 IPR005202 -
Apr5g0011 547 Pfam GRAS domain family 177 546 IPR005202 -
Apr5g0011 547 MobiDBLite consensus disorder prediction 58 78 - -
Apr5g0011 547 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 141 - -
Apr5g0011 547 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 145 547 - -
Apr5g0011 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 145 547 IPR005202 -
Apr5g0011 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 141 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0011 Apr-Chr5 87468 90985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0011 113 546 GRAS Transcription Factor Family AT5G48150 57.701 1.45e-177 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr5g0011 GRAS 2.5e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0011 - - gmx:100775665 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0011 5 87468 90985 Apr5g0011 5 87468 90985 ECH
Apr2g0318 2 3764199 3768700 Apr5g0011 5 87468 90985 PCT