Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0008 ATGCCAACTGTGTGGTTCTCTTTGAAGAGGTCTTTACACTGCAAATCTGAGCCATCTGATGTTCATGACCCAAAATCAAGGAAGCATTTGAGCACAATCTTGACCAAAAGGGCAGGAAGATCAGGGTGTTCTAGGTCCATTGCAAATCTCAAAGATGTGATTCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATTGGGAGCAGCGAGTTTCTCAACCCTATAACTCATGAAGTGATTTTGAGCAACTCAAGGTGTGAGCTTAAAATCACTGGATATGGAGGATTTCAAGAAGGGGTTGGTAGTGGTGGTGGTGGAAACAATGGTAGTGGAGGTGGTAGTGGTGGTTCAACTTTTGTGGGTACTTTGAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCACTACTTTAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCACCTTTCCTTCTATCAGATAAAGAAGGGTCTGGTCCTCATGGTGGAGGACTTCATTCTAGCAATAGGTTGTCTCTTGAGACAGATTCTAATGGGTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGATGCTGCTGAAGCCCATCATCTGTCCAAGCATGCTGTTACTGAACTTGCTGAGGGCGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGTTGGTTAAAGTCTGAAAACCAGTGTGGTCGAATCGAGAGGGTTTTGAAGGTGCACAACATGCAAAAGACTTTGGCTAGATTCGAAGAGTACAGAGAGATGGTGAAAATCAAAGCTAGCAAACTTCAGAAGAAGCATCCTAGGTGCCTTGCTGATGGAAATGAGCTTTTGAGGTTCTATGGCACCACTGTTGCATGCTCCCTTGGTCTCAATGGTTCTTCTAGTCTCTGCCTAGCAGAAAAGTGTTGTGTTTGCAGAATTATAAGGAATGGCTTTTCAGCCAAGAATGAGCTCAAGGGTGGTATTGGTGTTTTCACAACTTCCACAAGTGGAAGAGCTTTTGAGTCTATTGAGATTTTTGGTGATGAACCATCACTAAGAAAGGCACTGATAGTTTGCAGAGTGATAGCTGGCAGGGTTCATAGACCCTTAGAGAACATTCAGGAAATGGCAGCACAGACAGGATTTGACTCATTGGCTGGGAAAGTAGGCCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATTTGCAAACCTTGA 1287 0.4413 MPTVWFSLKRSLHCKSEPSDVHDPKSRKHLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSGGGGNNGSGGGSGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSDKEGSGPHGGGLHSSNRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELAEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLAEKCCVCRIIRNGFSAKNELKGGIGVFTTSTSGRAFESIEIFGDEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0008 428 SUPERFAMILY ADP-ribosylation 219 427 - -
Apr5g0008 428 MobiDBLite consensus disorder prediction 110 127 - -
Apr5g0008 428 MobiDBLite consensus disorder prediction 145 159 - -
Apr5g0008 428 PANTHER - 2 428 - -
Apr5g0008 428 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 428 - -
Apr5g0008 428 ProSitePatterns Zinc finger C2H2 type domain signature. 196 217 IPR013087 -
Apr5g0008 428 MobiDBLite consensus disorder prediction 110 187 - -
Apr5g0008 428 Gene3D - 208 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0008 Apr-Chr5 57015 59638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0008 1 428 C2H2 Transcription Factor Family AT5G54630 68.898 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr5g0008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0008 - - gmx:100787790 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0008 5 57015 59638 Apr5g0008 5 57015 59638 ECH