Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0007 ATGGGAATTCAGAAACATATGGTTACCATAAAGTTTAGACTTTGCGTTCTATTGGTTCTCGCTTTTGTAGCAGCTGTTAGCTCTACAGCAAAGAAGGAAACACAAGATGACTTTGTTAGCAAACTACTTGATCCTGCATGTGGATTGTTAGATGAACACACGGTGAAGATCTTATGGACCAATTGCCAGGAAGATTTATTTCATTTAATGAAAGAGGTTGAAGATTGTGATTTATGGCTGTCTCAGGAGTTGTCTGGCCACACCAATAAAATCAATTCAGAGATTCAACCATTAAAGCGAGCAGACATCCAAAAATTGATCAGTGCATGCCAGCCTCAATTCGAGGAGAACTTTCTTCACTATTTGGAAAAAAATAATCTTCCATTACCCATCTCAAGAGGAGAGGATGATTCCAAGATTTTGCATGTCAGTCATTTGGGATCACTTTTTTCCAGATCCAATGTTCCTAGAAGAAATTTTGGCCGTGTTTTGCTTCAGCACATATCAGAACCACCTAGTCCTGGCCCTGCAGTTGGATCACCTACACCAAGTTTAACACCATCTCCTGAACCCAGTTTAGCACCATCGTCTGAACCCAGCCTGGCCCCATCGCCTCTTGCTCCAGCACCTCTAGTTCCTAGTCCTCAGCATCCTCATTTGTCTCCATCAACATTTTTCCCAAAATTGACACCACCAGCAGCTTCAGAAATTTCTTCTCCTCCATCTTCTGACATTAACAAACAGGAAGATAAGCATAGTAATAAAAGAACAGTTGTTCTTGCTGTCGTTATAACTGCATTGGTGACATTTATAGCTGCAGCACTGCTCTTTTTATGCTGTAGTGGGTATTGTAAGACTGGCCGAGCTAGACTAAATGATGAGAGGCCCCTTCTCAGCTTGAGCATGAGTGACTACTCTGTTGGTCCTTCTAGTTTTGCTTTTGGAAATTCAATCAAAGGGGAGAAACTTGGGTTTCAGTCATCAAGTAATAGTTTAGTAGACAATAAGAAGAACTCAGTGCAAGAAAGCCAATCAATAGGAGCCTTTAGTGCTGCTGCCGGATCACCATTTGAACTTAAACCTCCTCCAGGGAGGGTGGGAGCCAGTCCCTCGGGAATGCCTCCTTTAAAACCTCCCCCAGGCAGGTTGAACCCTCTTCCCCACGAGCCACCTTCCTTTAGGCCTTCTGGTGATGCTGATACTGCTGTGGCTTCTGTTGCTGCAGCTCCTCCTCCTCCTGCCCCTCCTCAACAGCCTGGTATTGGTAGCACTCCACCACCACCCCCAGCATCAGCTGGTGCCAAACCTGGCCCACCTCCACCACCAGCAAAACCTGGTCCTCCCCCTCCACCACCTCCAGCAATAGCTGGTGCCAAACCTGGTCCTCCTCCTCCACCACCCCCAGCACCATTTGGTGCTAAACCTGGTCCTCCTCCTCCACCACTCCCAGCACCAGTTGGTGCAAAACCTGGTCCTCATCCACCACCGCCTCCTAAGAGTGGCATACCTCCTCCTCGAGCCCCTCCCCCAATTGGCCCAAAGATGGCTCAGCCTTTAGCTAGTGGATCAAAGGCTACAGTTGAAGCTAATGCAGAAGGTGCAGCTGATGCTCCCAAAGCCAAGCTAAAGCCTTTTTTCTGGGATAAGGTTCAAGCAAACCCCAATCAATCAATGGTTTGGAATCAGATCAAATCAGGATCATTCCAGTTTAATGAAGAAATGATAGAGACGCTTTTTGGCTATAACAATGGTCAAAGACAGAAAGAGTCTTCCTCCCAAGACCCTTCACCTCAGTATATGCATATCATTGACAAAAAGAAATCGCAAAATTTATTGATTCTGTTGCGTGCATTGAATGTGACAATGGAAGAAGTTTGTGATGCACTTTATGAAGGACATGAGCTTCCCTCGGAGTTCCTTCAAACCTTGCTGAAGATGGCACCAACATCAGACGAAGAACTTAAGCTTAGACTTTTTACTGGTGAGCTATCTCAACTTGGGCCTGCTGACCGTTTCCTGAAAGCCCTGGTTGACGTTCCATTTGCATTTAAGCGAATGGAAGCTCTGCTTTTCATGACCACACTTAAAGAGGAGCTCACAAGTACTATGGAATCTTTTGCCATTTTAGAGGTTGCTTGCAAGGAACTAAGAAACAGTAGGCTATTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACCGGCAACCGAATGAATGACGGAACATTCCGTGGTGGTGCACAAGCATTTAAACTTGATACTCTTCTGAAATTATCTGATGTAAAAGGAACAGATGGCAAGACCACACTCTTACACTTTGTAGTTCTAGAGATTATCCGTTCTGAGGGCATAAAAGCCGTTCGAAAGGCAAAAGAGAGCCAGAGTTCATCTAGTGTTAAATCAGATGATCTTCTCGATGATAGAACTCAAGAAACAGAAGAACACTACCGTGAAATCGGTCTTCAGGTGGTTTCTCACTTGAGCAGTGAACTCAAGAATGTTAAAAAAGCAGCAATTATAGACGCGGACAGCCTAACAGGAACCGCCGCCAAACTTGGGCATGGTCTCATAAAAACACAAGACTTGGTAAACAAAACCATGAAGAATGTGGAGGAAGATAGGGGGTTTGGTGAGACAGTGAAAAGTTTTGTGAAGAATGCCGAGGCTGATGTTATGAAACTGCTGGAAGAAGAGAAAAAAATCATGGCACTGGTGAAGAGCACTGGCGATTACTTTCACGGGAATGCTGGGAAGGATGAAGGCTTACGGTTGTTTGTAGTAATACGAGACTTCTTAGTAATGCTAGACAAGGTATGCAAGGAGGTGAGAGATACTCAGAAGAAGCCAGCAGCAAAAACACTAAAACAAGAGACTCCTCGAGGAGCATCTTCCTCTGAAACGCGTCCACCACCTTCTGATTTTCGTCAGCGGCTCTTTCCAGCAATCGCCGAAAGGAGGGTGGGTGACATTAGTTCAGATGAGGACAGCCCATAG 2988 0.4528 MGIQKHMVTIKFRLCVLLVLAFVAAVSSTAKKETQDDFVSKLLDPACGLLDEHTVKILWTNCQEDLFHLMKEVEDCDLWLSQELSGHTNKINSEIQPLKRADIQKLISACQPQFEENFLHYLEKNNLPLPISRGEDDSKILHVSHLGSLFSRSNVPRRNFGRVLLQHISEPPSPGPAVGSPTPSLTPSPEPSLAPSSEPSLAPSPLAPAPLVPSPQHPHLSPSTFFPKLTPPAASEISSPPSSDINKQEDKHSNKRTVVLAVVITALVTFIAAALLFLCCSGYCKTGRARLNDERPLLSLSMSDYSVGPSSFAFGNSIKGEKLGFQSSSNSLVDNKKNSVQESQSIGAFSAAAGSPFELKPPPGRVGASPSGMPPLKPPPGRLNPLPHEPPSFRPSGDADTAVASVAAAPPPPAPPQQPGIGSTPPPPPASAGAKPGPPPPPAKPGPPPPPPPAIAGAKPGPPPPPPPAPFGAKPGPPPPPLPAPVGAKPGPHPPPPPKSGIPPPRAPPPIGPKMAQPLASGSKATVEANAEGAADAPKAKLKPFFWDKVQANPNQSMVWNQIKSGSFQFNEEMIETLFGYNNGQRQKESSSQDPSPQYMHIIDKKKSQNLLILLRALNVTMEEVCDALYEGHELPSEFLQTLLKMAPTSDEELKLRLFTGELSQLGPADRFLKALVDVPFAFKRMEALLFMTTLKEELTSTMESFAILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAVRKAKESQSSSSVKSDDLLDDRTQETEEHYREIGLQVVSHLSSELKNVKKAAIIDADSLTGTAAKLGHGLIKTQDLVNKTMKNVEEDRGFGETVKSFVKNAEADVMKLLEEEKKIMALVKSTGDYFHGNAGKDEGLRLFVVIRDFLVMLDKVCKEVRDTQKKPAAKTLKQETPRGASSSETRPPPSDFRQRLFPAIAERRVGDISSDEDSP* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0007 995 ProSiteProfiles Formin homology-2 (FH2) domain profile. 532 959 IPR015425 -
Apr5g0007 995 PRINTS Proline rich extensin signature 171 187 - -
Apr5g0007 995 PRINTS Proline rich extensin signature 196 208 - -
Apr5g0007 995 PRINTS Proline rich extensin signature 211 232 - -
Apr5g0007 995 PRINTS Proline rich extensin signature 370 395 - -
Apr5g0007 995 PRINTS Proline rich extensin signature 405 417 - -
Apr5g0007 995 SUPERFAMILY Formin homology 2 domain (FH2 domain) 463 949 - -
Apr5g0007 995 MobiDBLite consensus disorder prediction 977 995 - -
Apr5g0007 995 Gene3D Formin, FH2 domain 537 966 IPR042201 -
Apr5g0007 995 SMART it6_source 532 948 IPR015425 -
Apr5g0007 995 MobiDBLite consensus disorder prediction 955 969 - -
Apr5g0007 995 Pfam Formin Homology 2 Domain 535 933 IPR015425 -
Apr5g0007 995 PANTHER FORMIN-LIKE PROTEIN 1 993 - -
Apr5g0007 995 MobiDBLite consensus disorder prediction 167 252 - -
Apr5g0007 995 MobiDBLite consensus disorder prediction 174 217 - -
Apr5g0007 995 MobiDBLite consensus disorder prediction 408 515 - -
Apr5g0007 995 MobiDBLite consensus disorder prediction 367 392 - -
Apr5g0007 995 PANTHER FORMIN-RELATED 1 993 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Apr5g0007 995 MobiDBLite consensus disorder prediction 353 537 - -
Apr5g0007 995 MobiDBLite consensus disorder prediction 943 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0007 Apr-Chr5 45515 52788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0007 233 985 FH2 protein (formin) Gene Family AT5G54650 53.325 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0007 - - gmx:100793413 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0007 5 45515 52788 Apr5g0007 5 45515 52788 ECH