Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0002 ATGGTTTCCCGGGAAAACAGCAATTGGCTCTTCGATTACGGCTTGATTGACGATATTCCTGTCCCTGATGCCACCTTCACTGTTCCTTCCTCTGGCTTCTCCTGGCACCCGCAGGCCTTGAATTCCTCTTCGAATGTCGGTGTTGACATTGATGGTTCAATGGGGGATTCTGACGGTTTCAAAGAGTCTGGTTCAAAGAAGAGGGTTAGATCTGAGTCATGTGCTGCTTCTAGCTCGAAGGCATGTCGGGAGAAGTTGCGAAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGACGGCCTACCAAAACAGACAAGGCTGCTATCCTGGTTGATGCTGTCCGAATGGTGACACAGTTACGAGGTGAAGCCCAGAAGTTGAAAGACACTAATCTGGGTCTTCAAGAAAAGATCAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGTAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCTTTGAATGCACAGCCTAGTTTCATGCCTCCCCCTGCTGCATTTGCTGCGCAAGGCCAACCGCATGGCAATAAGTTGGTACCTTTCATTAGCTATCCAGGAGTTGCAATGTGGCAGTTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCACGTCCTCCGTCCACCAGTTGCCTAA 699 0.4864 MVSRENSNWLFDYGLIDDIPVPDATFTVPSSGFSWHPQALNSSSNVGVDIDGSMGDSDGFKESGSKKRVRSESCAASSSKACREKLRRDRLNDKFVELGSILEPGRPTKTDKAAILVDAVRMVTQLRGEAQKLKDTNLGLQEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKSLNAQPSFMPPPAAFAAQGQPHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0002 232 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Apr5g0002 232 Gene3D - 78 153 IPR036638 GO:0046983
Apr5g0002 232 CDD bHLH_AtILR3_like 80 155 - -
Apr5g0002 232 PANTHER BHLH TRANSCRIPTION FACTOR 1 232 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Apr5g0002 232 Coils Coil 123 178 - -
Apr5g0002 232 MobiDBLite consensus disorder prediction 53 72 - -
Apr5g0002 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 145 IPR036638 GO:0046983
Apr5g0002 232 PANTHER TRANSCRIPTION FACTOR ILR3 1 232 - -
Apr5g0002 232 SMART finulus 81 132 IPR011598 GO:0046983
Apr5g0002 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0002 Apr-Chr5 19094 22583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0002 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.548 2.38e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g0002 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0002 - - gmx:100788858 385.956