Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2807 ATGGAGAAGGTGAATTTGGTGAAGAATGGGGAGCTGAGATTGCCCCCTGGGTTCCGCTTCCATCCGACTGATGAGGAATTGGTTGTGCAATACTTGAAGAGAAAGGTCTTCTCTTTCCCTTTGCCGGCCTCTATAATTCCTGAGGTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGACTTGGAGCAAGAGAGATACTTCTTCAGCACCAAAGAGGCCAAATATCCTAATGGGAACCGATCCAACAGAGCCACAAATTCAGGGTATTGGAAGGCAACTGGGTTGGACAAACAAATTATAACTTCAAAAGGGAACCACGTTGTGGGGATGAAGAAGACTCTTGTTTTCTACAGAGGCAAACCTCCTCATGGATCAAGAACTGATTGGATCATGCACGAATATCGCCTCCTTAGTTCCTCTCAGTCTCAGAGCTCCATGGAAAATTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAAGTGGTGCTAAGAATGGCGAGGACAGTCTCGATAACATGAGTAGCCGCAAGGGAACCATATTTTGCTAA 552 0.4583 MEKVNLVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDVCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIITSKGNHVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLSSSQSQSSMENWVLCRIFLKRRSGAKNGEDSLDNMSSRKGTIFC* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2807 183 Gene3D NAC domain 23 163 IPR036093 GO:0003677|GO:0006355
Apr4g2807 183 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Apr4g2807 183 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Apr4g2807 183 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Apr4g2807 183 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 174 - -
Apr4g2807 183 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2807 Apr-Chr4 36595722 36624920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2807 1 166 NAC Transcription Factor Family AT5G13180 79.042 1.26e-98 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr4g2807 NAM 2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2807 - - gmx:100170709 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2807 4 36595722 36624920 Apr4g2807 4 36595722 36624920 ECH
Apr4g2807 4 36595722 36624920 Apr1g0326 1 3924418 3925850 ECH
Apr4g2807 4 36595722 36624920 Apr2g1144 2 17699982 17701408 ECH
Apr4g2807 4 36595722 36624920 Apr4g1577 4 17406467 17407863 ECH