Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2801 ATGGGTTACAGTTACTGCGAATTTGAAAGGGCTGAGAATGAGAGGGAAATATCACGTAATCAACGAGCAACACAGTTAACAAGTTTAAGGGCTCGATATGAGAGGGAAATATCACGTATTCGAAGAGAAATACAGTTAACAAGTGTAAGAGGGGCTGGGGAATTACCCCGCTGTGAAACAACGACGCTGCAGTTTCAAAGTGTAAGGGATGAGAGGGTAACATACAGACCAACATTGCCACCACCTACAATCTTCACAGATGATTGCACCATTTGCATGGAACAACTTCAGAATGGAGAGTCCATTCAACCTTCTAGAGTGTGTGTTCATCAATTCCACTCCTCTTGCATCCGCACTTGGTTGGAGATGGGATACACTACTTGTCCTCTCTGCCGCAAAAATTTTATCTATTAA 414 0.43 MGYSYCEFERAENEREISRNQRATQLTSLRARYEREISRIRREIQLTSVRGAGELPRCETTTLQFQSVRDERVTYRPTLPPPTIFTDDCTICMEQLQNGESIQPSRVCVHQFHSSCIRTWLEMGYTTCPLCRKNFIY* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2801 137 SMART ring_2 89 131 IPR001841 -
Apr4g2801 137 Pfam Ring finger domain 87 132 IPR001841 -
Apr4g2801 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 136 IPR013083 -
Apr4g2801 137 SUPERFAMILY RING/U-box 88 135 - -
Apr4g2801 137 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Apr4g2801 137 PANTHER RING-H2 FINGER PROTEIN ATL51-LIKE 29 133 - -
Apr4g2801 137 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 29 133 IPR044675 -
Apr4g2801 137 Coils Coil 23 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2801 Apr-Chr4 36531267 36531792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2801 87 137 C3H Transcription Factor Family AT2G27940 43.137 8.63e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2801 - K16282 aprc:113865236 74.7146