Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2792 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAAGGGTTCAAAGGAAGAAGAGTGACAAGGTCTAGATCCTCCTTCCACTATGGCGCTTCAAGTGACCCTCTTTACTCTTTGGAAGGAAGATATTGTGTATCGGGCGAAAGAATTAAAACACAGAGAACAAAATCTGATGCCTCACGATATCAGATTACAAGTGGAGAGTTAAAAGGTGACAATCTTACTGCTAAGAAGCAGAGGTCAAGGGACAATCTTTTCCTGAGAGACAAAATGGATGAACGGTTGAAGAATGAAACCGAAAAGAAATCTTCTTGTGATACAAATTCAGGCAAAGGATTTGAGGTGGTTGAGATTAATGAGGTGATTGAGCAAGAAGCTAGAAGAGTTAAAGAAGCTCATTCAGAAGAAGAGTCTAATGCAAAAAGAGGAAAAGAAAAGAAGTCCAGTGTACATATGCTTAGACACTCAAGTGAAACCAGAAAAAATGTAAAACCACAGGAGGACTCGTACACTAGATCTAATAGCAAAGGCTTTGAAGATTGCATCAGGAATAAAAATAGTGATCATGCTATGCAAGCAGCCTCTAGTCTTGCTCTTGATGACGTTGCTGTCCAAGCAGTTGTTTCCATTCTAAATGGATACATAAAGCATTTTCTAAAAGATGAGGATTTTCGGTCTACATTGCGTCACAAATGTTTCTCCTCCTTGAATTTTATTGAACTGGAAGAAGAGAACATTAGTGAGACCAAAGTCATAGCAAGTCTTGAGCAAGCAATTGAGACCATTGAGCAAACTGCTGAGGAACCTATATCCGCTGCGTATTTGAAAAGAACCACAATGAAGCTTAGCATTATTACAGGTTTGAGTTTAAATGATTTGAAGTATGAGTGCACATGTGGGATCCCAAATTATAAGTTGTCAGCGTGTGCTCATCTTTATCTCAGTGTGATATACATGATGCAGAGAAAAAATAGGGTCTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCACGGACTATATTGATGGCTGAACTGTGGGAGCATCTATTTTCTCCACAATTTTCTCATTTGAAGGCATGGTACGACAGGGAAGCAGAGGTTCTAGTAGATGCACCAACCAAAACAAGAAAGCTAAAACTTCTTCAAAAAGTGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTTTATACTACAAAGATTGGCTCACTGAAGGAGTAGAATCTCCACCTATTCCTTCAATTGGAATTCCATCAGTTTCTGTCAAAGGAAGTCATGATGGAAGTTCACTTGATCATTCTCCTGAGTCTGCTAGCTCCATTGACCCATTCTCACCACAGTCAATGATCAGCAAGAAACTGTATAATTCTGTGTTTGGCAGCTCGAGAAAATCTGGAGTTCATCATGTCAAAGATATTAAGGATGATGACAACCTAGAAAACTGTGTGAGAGGTTCTTATGGTTCTACTATTGTTAAACAGACATTAACTTATGAGTCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGGTTTCGCACAACGTGTAGCCATTGATACATTCAAGCCTCAGAAAGGAACTTCAATAACAGCTAAAGAAGAATGGCAAAAGAGGAATCTCAACAATGACATTCATAACTCTTTCTCTATGCAAAGTAATTTAAACAGCCACATCATTGACGATCTTCCACATGAAAAAGCAATTGAAGTTTCTTTCAGAAAGCCAAATAAGATAATTTCTGCTTTTGAAGGACTATATTTTGCAAACATTCCGGATGAATTTATTTGTCCTCTTACTGGAAAACTCTTTGAGGAACCAGTCACCATAGAGACTGGTCAAACCTTTGAAAGAGAAGCCATTAAATCATGGTTTGAAAAGGGAAACAGAACATGCCCAGTAACAGGAAATACTTTGGAATGTGTGGCCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAACAATTTGATTACCTTCTGTATCTTGCTTCTCAAACAGTGGATAATTCAAAGGAGCTTGAGTTTAGAGCGAGGGATGAGGCTGCCAGTTTCAAGTTAGAGAGTCTTGTCTCTTCTTTGAAAGAAGAGGAGAAATCAACTTATGCTAAGCATCTCATCTCTTTAGGAGTTCTTCCATTTCTTTTTAGGAGGTTTGAACACGGAAATGTGGAAGAAAAATCACACGTGGTGTCACTCTTGCTAAATTGTATTCAAGCAGACTCTGGTTGCATGTATCAGATAGCAAGAAGTGTTGACAGAAAATGTCTTCTTGAGCTTCTTCATAGCAAGGAGGTTACCCCCGCAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGACTTGGTGGGTGAAACAATGTTTAACACAATGCATATTCTACTCATGTATCTTGAGAATTCTTCTCCATTAGACAAGCCCCTAATTGCTGTCCTGTTGTTACACTTCGATCTGCTGGTTGAGCCTCAAAAGTTTAGTGTATACAGAGAGGTGGCAGTGAATGCAATTGCAGTGGCACTTGATGCCAGCTTAAATGATGAAAAGGTCAGGGAAAAGTGTTGCAGAGCACTTTTAATCTTGAGTGGACATTTTTCTTCCACTGGAAAGATACCAACCAAGGTTAGCATCTTAAAACAAGCAGGGTATAATAATGAGAGCTTAGAAGTGAAACCTCCAGGCCATGAAGAGGAGGTTCAACAATCAGGTGTAACCATTTCACATGAAGATGAAGAAAAAAGGGGTGAAGAGTTGCTAATGAACTTGTTAGAGTCATTGATTGGTGATGGAGAAAGCCCATTTTTGAAAACCATGTCCAGATGTTTAGATTCTAAGCACCTAGAGTTGGTGACGGCGTGTCTAATGACTGTCACATGGTTGAGCTCTTCATTATCTATGCTATTTAGTGCTGGATTGCATCTTCCCGCCTTCTTAGCCATCATCTCTCAGTTGAAAGGAATCCTGAAAAATGGAGAACTTGAACTCAAGACTCTTGCTTCTATTTCTTTGCTTAATTTCAGTAAAATAGCAGAATGCAGAACGCTTTTGAAGACTATGGCAGAGGATATTTCTCCCCTTCTTCATGGACTTGTTGATGTAACATGGACAGCAAAGCAGCTACATGAAATTGTGTCTAGGGAGAATCTGTAG 3219 0.3886 MASSLEELLAEEGFKGRRVTRSRSSFHYGASSDPLYSLEGRYCVSGERIKTQRTKSDASRYQITSGELKGDNLTAKKQRSRDNLFLRDKMDERLKNETEKKSSCDTNSGKGFEVVEINEVIEQEARRVKEAHSEEESNAKRGKEKKSSVHMLRHSSETRKNVKPQEDSYTRSNSKGFEDCIRNKNSDHAMQAASSLALDDVAVQAVVSILNGYIKHFLKDEDFRSTLRHKCFSSLNFIELEEENISETKVIASLEQAIETIEQTAEEPISAAYLKRTTMKLSIITGLSLNDLKYECTCGIPNYKLSACAHLYLSVIYMMQRKNRVSAKHLLQVFCDSPFQARTILMAELWEHLFSPQFSHLKAWYDREAEVLVDAPTKTRKLKLLQKVYNEHLDSGTHIFALYYKDWLTEGVESPPIPSIGIPSVSVKGSHDGSSLDHSPESASSIDPFSPQSMISKKLYNSVFGSSRKSGVHHVKDIKDDDNLENCVRGSYGSTIVKQTLTYESETVKFTDQDIEGFAQRVAIDTFKPQKGTSITAKEEWQKRNLNNDIHNSFSMQSNLNSHIIDDLPHEKAIEVSFRKPNKIISAFEGLYFANIPDEFICPLTGKLFEEPVTIETGQTFEREAIKSWFEKGNRTCPVTGNTLECVAMPFTNLILKRLIDNWKSEQFDYLLYLASQTVDNSKELEFRARDEAASFKLESLVSSLKEEEKSTYAKHLISLGVLPFLFRRFEHGNVEEKSHVVSLLLNCIQADSGCMYQIARSVDRKCLLELLHSKEVTPATNAILFLTELLSMKRRKDVTSFISDLVGETMFNTMHILLMYLENSSPLDKPLIAVLLLHFDLLVEPQKFSVYREVAVNAIAVALDASLNDEKVREKCCRALLILSGHFSSTGKIPTKVSILKQAGYNNESLEVKPPGHEEEVQQSGVTISHEDEEKRGEELLMNLLESLIGDGESPFLKTMSRCLDSKHLELVTACLMTVTWLSSSLSMLFSAGLHLPAFLAIISQLKGILKNGELELKTLASISLLNFSKIAECRTLLKTMAEDISPLLHGLVDVTWTAKQLHEIVSRENL* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2792 1072 Coils Coil 118 138 - -
Apr4g2792 1072 Pfam U-box domain 596 666 IPR003613 GO:0004842|GO:0016567
Apr4g2792 1072 MobiDBLite consensus disorder prediction 51 82 - -
Apr4g2792 1072 CDD RING-Ubox_PUB 600 641 IPR045210 -
Apr4g2792 1072 MobiDBLite consensus disorder prediction 428 448 - -
Apr4g2792 1072 MobiDBLite consensus disorder prediction 126 181 - -
Apr4g2792 1072 Gene3D - 688 1062 IPR011989 -
Apr4g2792 1072 MobiDBLite consensus disorder prediction 126 166 - -
Apr4g2792 1072 PANTHER OS04G0584500 PROTEIN 1 1070 - -
Apr4g2792 1072 MobiDBLite consensus disorder prediction 56 71 - -
Apr4g2792 1072 MobiDBLite consensus disorder prediction 912 934 - -
Apr4g2792 1072 ProSiteProfiles Zinc finger SWIM-type profile. 281 319 IPR007527 GO:0008270
Apr4g2792 1072 SUPERFAMILY ARM repeat 710 1038 IPR016024 -
Apr4g2792 1072 SMART Ubox_2 599 663 IPR003613 GO:0004842|GO:0016567
Apr4g2792 1072 SUPERFAMILY RING/U-box 590 666 - -
Apr4g2792 1072 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 670 IPR013083 -
Apr4g2792 1072 PANTHER OS04G0584500 PROTEIN 1 1070 - -
Apr4g2792 1072 ProSiteProfiles U-box domain profile. 595 670 IPR003613 GO:0004842|GO:0016567
Apr4g2792 1072 MobiDBLite consensus disorder prediction 913 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2792 Apr-Chr4 36452689 36459575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2792 596 747 U-box Gene Family AT5G42340 30.909 1.44e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2792 - - gmx:100820501 1647.1