Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2748 ATGTCTAACCTCAAAGTCATCAAAACCCTTCTCCTCTCTCTCTCTCTCATCATCATCACCAATGCCACTCACAACGAGGATGCACACTTCATGTTGGAACTCCGCGAACTCTTCAGCACGGACGAACGCTCCTCCCTCAACGCCTCCTTCTGCTCGTGGAGAGGCATATCATGCGACAACTCCAACCGTGTCACCTCCATCGACCTTCCTTTAAGAGCCCTCACAGGAAACCTCCCTCCAAACCTCAACTCTCTCTCTCAACTTACCTACCTCGATCTCACCGGCAACAATCTCTTTGGCAATCTCCCCTCTCTCGCCAACCTCTCCATGCTCCAAACGGCTTACCTTTGTTCCAACGGCTTCACTTTCATCCCTCCAGGTTCCTTCCAAGGCCTTACCAGCTTGCAAAAGCTAGGCCTCAGAAACAACATCAATCTCCAACCCTGGTACTTTCCAACCGATTTGAATCAGTCTTCGAATCTACAAATTCTCGATCTTTCTCTTACAAACATGATGGGTCCTTTGCCTGACATATTCCACTCATTTCCCAATTTGCATACCCTTCTACTCTCTACCAACAATATCACCGGGGTCTTGCCTAAGTCCTTTGCACATTCTCGAATTTCTGATTTGCAACTCGACAACCAGAAGTTTGGCATGTCGGGTAATCTTGAGGTGCTTTCGCGCATGAACAACTTGTCCAAGGTGTTGCTGCAGAAAAATAAATTCCGGGGTTGTATTCCTGATTTGGCCAATTGCACCTATTTGTCTGAACTGCATCTTAGCTACAATGAGTTAACTGGTGTGGTTCCTCCTTCCTTGATGCGTCTTCGTTACTTGAACTTCGTGTTTTTGGACCACAACATGCTGCAGGGTCAGTATCCTGTGTTTAAGGATGGTGTGGAGGACACTCATCAGTGGAATAACTTTTGCAAAGAGTTCGATCATAATAGAACTTGCGATCACCGGGTTACCCTTTTTCTTGAAATTGCTTCTGCGTTTGGGTATCCGATAAAGCTTTCAAAGTCGTGGAAAGGGAACGATCCTTGTCAAAAGTGGGGTTTTGTTGAGTGTGATGGAAAGGGTAAGATTGTTAAAGTCAATTTAGCCAACCAGAGGTTGAAGGGAAGAATCTCAAACGCATTTGCCAATTTGACAGATTTAACGACACTGAATCTCAGTGGTAATCATTTGTATGGTTCCATACCACAGAGGTTGACAAATTTGCCTCAGCTTGAGTCCTTCGATATCTCCAACAACAATCTATCTGGAGAGGTTCCTCCATTTTCATCAAAGGTGCAGGTAAATGCTGCTGGCAATGCTTGGCTTCGGAATTCTAGTTCTTCCGGAGGCGGTGGGGAAGGAGTGACACCAAATGGAAATTCACCTACATATAATGTTGATAATAGTACTTCACATTCACTGCTTCGTTCGATTGCATTTGCAGGTGCTGCGGGTGGTGCTGGAATCGCTGTAACCTGTGTTATGATATTTTTTTACTCTAAGGAGTGTCTTAGCTTAGCAGAAAGGAGAATCTGGAAGAAAACAAGGACAGGTCATGACCACAACATTGAGGACTTAATAAGTACTTATTGTTCTTTGGGGCCAAAGCGATATAGTTTTTCAGATGTAAAAAGGATGACAAACTCATTCCGACATAAACTAGGCCACGGAGGATATGGTGTTGTGTACAAAGCAAGCTTACCTGATGGTTGTCTTGTAGCAGTAAAAGTACTGAATGAGACAAAGGGAAGTGGAGAAGAATTCATAAATGAAGTCACCAGCATTAGTAAAACATCACATGTCAACATTGTCTCGCTTTTGGGATTTTGTTATGAGGGGAACAAAAGAGCTCTCATCTATGAATTCATGGCCAATGGCTCATTAGATAAGTTCATAAATAAAAAGGGATCTCCAAACGCTATGAGTAATTTGGATTGGAGCACATTGTACAGCATTGCAATTGGTGTTGCTCGAGGACTACAATACTTGCACCAAGGATGTAATACAAGGATTCTGCATCTAGATATTAAACCTCAAAATATTCTTTTGAATGAAGATTTTAGTCCAAAAATATCTGATTTTGGACTTGCTAAAATATGCAAAAAGAAAGAGAGCATTGTGTCCTTATTGGGGACAAGAGGAACTCCAGGATATATTGCACCAGAAGTATTTTGCCGAACATATGGTAAAGTTTCTCACAAATCTGATGTATACAGCTATGGCATGTTGATTCTTGAAATGGTTGGAGGAAAGAAGAATGGCGATAGTGGCGGGTCAGTTACCACTCAAATGTATTTCCCAGATTGGATCTATAAGGATCTTGGGGAAGGTAATGTTCATGCAAACAATTTGAACAACACAGATGAAGAAAATGATATAGTAAGGAAAATTACTTTGGTGAGTTTATGGTGCATTCAACCAAACCCATTAATTAGGCCACCAATTAGTAAAGTATTAGAGATGTTAGAGGGACCATTGCAATCAGTGCCGCTACCTCCAAAGCCTATCTTGTGTTCTCCTGACAGACTACCATTCCAATTTTCCAAAATATCCTCTACAACTTTGTATGACACAAATTCAGTAACCACGTAA 2595 0.4216 MSNLKVIKTLLLSLSLIIITNATHNEDAHFMLELRELFSTDERSSLNASFCSWRGISCDNSNRVTSIDLPLRALTGNLPPNLNSLSQLTYLDLTGNNLFGNLPSLANLSMLQTAYLCSNGFTFIPPGSFQGLTSLQKLGLRNNINLQPWYFPTDLNQSSNLQILDLSLTNMMGPLPDIFHSFPNLHTLLLSTNNITGVLPKSFAHSRISDLQLDNQKFGMSGNLEVLSRMNNLSKVLLQKNKFRGCIPDLANCTYLSELHLSYNELTGVVPPSLMRLRYLNFVFLDHNMLQGQYPVFKDGVEDTHQWNNFCKEFDHNRTCDHRVTLFLEIASAFGYPIKLSKSWKGNDPCQKWGFVECDGKGKIVKVNLANQRLKGRISNAFANLTDLTTLNLSGNHLYGSIPQRLTNLPQLESFDISNNNLSGEVPPFSSKVQVNAAGNAWLRNSSSSGGGGEGVTPNGNSPTYNVDNSTSHSLLRSIAFAGAAGGAGIAVTCVMIFFYSKECLSLAERRIWKKTRTGHDHNIEDLISTYCSLGPKRYSFSDVKRMTNSFRHKLGHGGYGVVYKASLPDGCLVAVKVLNETKGSGEEFINEVTSISKTSHVNIVSLLGFCYEGNKRALIYEFMANGSLDKFINKKGSPNAMSNLDWSTLYSIAIGVARGLQYLHQGCNTRILHLDIKPQNILLNEDFSPKISDFGLAKICKKKESIVSLLGTRGTPGYIAPEVFCRTYGKVSHKSDVYSYGMLILEMVGGKKNGDSGGSVTTQMYFPDWIYKDLGEGNVHANNLNNTDEENDIVRKITLVSLWCIQPNPLIRPPISKVLEMLEGPLQSVPLPPKPILCSPDRLPFQFSKISSTTLYDTNSVTT* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2748 864 ProSitePatterns Protein kinases ATP-binding region signature. 555 577 IPR017441 GO:0005524
Apr4g2748 864 SMART LRR_typ_2 182 205 IPR003591 -
Apr4g2748 864 SMART LRR_typ_2 385 409 IPR003591 -
Apr4g2748 864 SMART LRR_typ_2 108 131 IPR003591 -
Apr4g2748 864 SUPERFAMILY Protein kinase-like (PK-like) 526 823 IPR011009 -
Apr4g2748 864 Pfam Leucine rich repeat N-terminal domain 25 59 IPR013210 -
Apr4g2748 864 Pfam Leucine rich repeat N-terminal domain 328 359 IPR013210 -
Apr4g2748 864 Gene3D Ribonuclease Inhibitor 24 317 IPR032675 -
Apr4g2748 864 Gene3D Phosphorylase Kinase; domain 1 525 623 - -
Apr4g2748 864 SMART serkin_6 549 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2748 864 Pfam Protein kinase domain 553 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2748 864 PANTHER OSJNBA0070M12.3 PROTEIN 11 824 - -
Apr4g2748 864 ProSiteProfiles Protein kinase domain profile. 549 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2748 864 Gene3D Transferase(Phosphotransferase) domain 1 624 830 - -
Apr4g2748 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672|GO:0006468
Apr4g2748 864 Pfam Leucine rich repeat 366 422 IPR001611 GO:0005515
Apr4g2748 864 Pfam Leucine rich repeat 112 167 IPR001611 GO:0005515
Apr4g2748 864 Gene3D Ribonuclease Inhibitor 322 447 IPR032675 -
Apr4g2748 864 MobiDBLite consensus disorder prediction 445 466 - -
Apr4g2748 864 SUPERFAMILY L domain-like 36 429 - -
Apr4g2748 864 ProSiteProfiles Leucine-rich repeat profile. 87 109 IPR001611 GO:0005515
Apr4g2748 864 PANTHER RECEPTOR-LIKE KINASE TMK4 11 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2748 Apr-Chr4 35999284 36002589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2748 463 863 Receptor kinase-like Gene Family AT1G66910 51.463 4.63e-126 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Apr4g2748 Pkinase 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2748 - - ahf:112729553 834.713